RnoEX0101805 @ rn6
Exon Skipping
Gene
ENSRNOG00000011627 | Zfr
Description
zinc finger RNA binding protein [Source:RGD Symbol;Acc:1311890]
Coordinates
chr2:62198548-62204162:+
Coord C1 exon
chr2:62198548-62198689
Coord A exon
chr2:62203124-62203221
Coord C2 exon
chr2:62204067-62204162
Length
98 bp
Sequences
Splice sites
3' ss Seq
GCCAATTCAATCCATTTTAGATG
3' ss Score
7.16
5' ss Seq
CAGGTTCGG
5' ss Score
6.2
Exon sequences
Seq C1 exon
GTTATAAGTCCTGAGAAGTATGACATAAAATGTGCGGTGTCTGAGGCAGCGATCATTTTGAACTCGTGTGTGGAACCCAAAATGCAAGTCACTATCACCCTGACATCTCCAATTATTCGAGAAGAGAACATGAGGGAAGGAG
Seq A exon
ATGTAACCTCGGGTATGGTGAAAGACCCACCGGACGTCTTGGACAGGCAAAAATGCCTTGACGCTCTGGCTGCTCTACGCCACGCTAAGTGGTTCCAG
Seq C2 exon
GCTAGAGCTAATGGCCTACAGTCCTGTGTGATTATCATACGTATTCTCCGAGACCTTTGTCAGCGAGTTCCAACATGGTCTGATTTTCCTAGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011627_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.031 A=0.261 C2=0.000
Domain overlap (PFAM):
C1:
PF075289=DZF=FE(18.9=100)
A:
PF075289=DZF=FE(12.9=100)
C2:
PF075289=DZF=FE(12.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGAACTCGTGTGTGGAACCC
R:
CAGACCATGTTGGAACTCGCT
Band lengths:
167-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]