RnoINT0168799 @ rn6
Intron Retention
Gene
ENSRNOG00000011627 | Zfr
Description
zinc finger RNA binding protein [Source:RGD Symbol;Acc:1311890]
Coordinates
chr2:62203124-62204162:+
Coord C1 exon
chr2:62203124-62203221
Coord A exon
chr2:62203222-62204066
Coord C2 exon
chr2:62204067-62204162
Length
845 bp
Sequences
Splice sites
5' ss Seq
CAGGTTCGG
5' ss Score
6.2
3' ss Seq
GTTTTTGTGTTGCCCTCAAGGCT
3' ss Score
6.35
Exon sequences
Seq C1 exon
ATGTAACCTCGGGTATGGTGAAAGACCCACCGGACGTCTTGGACAGGCAAAAATGCCTTGACGCTCTGGCTGCTCTACGCCACGCTAAGTGGTTCCAG
Seq A exon
GTTCGGAACATCATTTTACTTTTTTCTTGTAGCCTTATGAGAGAGTAGTTCAGTACAACATGTTTAACTATGCTTAAACATTTCAAACAATTGTCTAAACAACACTATTTTAAATTAAATCTCAGAAAATGTTATCATAGAAGCTGAGTATAACAATCTGCATTTTGCGGTTACTATTAATTTGACAATAAACAGGTATGGGGGTGTGTTTGTAGTCTGGGTTTTTTATTTTTAGTGGCTATATTTAAAGTTGACTTGTTTAGGAACATCACATGTTTTTTTATATACCTTATATTCCATAAGGCTGCAGATTAACTTTGCTTTAAATAATGGAATATGTGTTTAAAGCTTTGTGTATAGTTTTAAGATTTTTTCCCCTTCTTTCTCTTAAGTTAATAAGTGTAGGGAATGAAAGGTGAGGAAACAGCTGCTTGGTTTAGTGACTTTGCAGACATGCAAAGGCACAGAGAGGAAACCAAACAGATTTCCTTAACCTTTCAGTCCCTAGACAAACTTTTTAGCTCTTTACTTTTCCTTTTTATTTCTAATTTAGGCAGATTTTTTTCAGTTTACTGTTTTGTATGAACACAGGTCAAGGTTCACAGGGGATCAAGAAATATTATTCTTGTATAATCTGTTTACTTTGACCTAAATACTAGCTTTTAAATACTAACTCTGGCATAAAATACTGCTGTAAATGGCAGCTCATTGGAACCAATTTCAATGTAATCATTTTATTTTTAGTCTGAGCTTCCATTGAACAGTGGTATTTTAACTTTTTTTCATCAAGGGATATTTTTAATATTTCTAAGATTAATTCAGTTGGTTTTTGTGTTGCCCTCAAG
Seq C2 exon
GCTAGAGCTAATGGCCTACAGTCCTGTGTGATTATCATACGTATTCTCCGAGACCTTTGTCAGCGAGTTCCAACATGGTCTGATTTTCCTAGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011627:ENSRNOT00000016196:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.261 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF075289=DZF=FE(12.9=100)
A:
NA
C2:
PF075289=DZF=FE(12.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACCTCGGGTATGGTGAAAGAC
R:
CCAGCTAGGAAAATCAGACCATGT
Band lengths:
190-1035
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]