GgaINT0063938 @ galGal3
Intron Retention
Description
NA
Coordinates
chrZ:9108504-9109519:-
Coord C1 exon
chrZ:9109422-9109519
Coord A exon
chrZ:9108600-9109421
Coord C2 exon
chrZ:9108504-9108599
Length
822 bp
Sequences
Splice sites
5' ss Seq
CAGGTTCGG
5' ss Score
6.2
3' ss Seq
GATTTTGTATTGCTCTCAAGGCT
3' ss Score
5.08
Exon sequences
Seq C1 exon
ATGTAACCTCGGGTATGGTGAAAGACCCACCGGACGTCTTGGACAGGCAAAAATGCCTTGACGCTCTGGCTGCTCTACGCCACGCTAAGTGGTTCCAG
Seq A exon
GTTCGGAACATCATTTTACTTTCTTCTTGTAGCCTTATGAGAGATTAAGTTCAGTTGCATTATAAGTGTTTAATTGTCTGAAAACACTCAGCGTTGTTCATGCTAATAATACTTAATATTTTTCTGGTACCTAAATTTAAATGTAGAAGGTTGAGTATGGAGGAACTGCTTTATGCAGTTATGGCTCATTTGACATGATTTTTTTTTTCTGGTCTTTGAGAAGGCGATGTTGAAAGTTTGACTCGCTTGGGGTGATCATATATTGTATATTTGTTATATATTCCATAAGGCTGCAGAGTAACTTTGCTTTAAATAATGGAATATGTGTTTAAAGCTTTGTGTTTAGATTTAAGACTTTTTTTCCTATTTCTTTAAGTGCATTGAGTGTAGGGAATGAAAGGTGAGAAGCAACTGTTTGGTTTAGTGACTTTGCATTCTGGCAAAGGCACAATAAAGAAACCAAACAGATTCCCTTGACCTTTCAGTCTCTATACCTACTTCTTAGACCTTTACTTTATCCTTTTTATTTCTAATATAGAAAGATACTGTATTTATTGTTACAAGTGAACATGGGTCAAAGTGTACAGGGGATCAAGAAATGTTATTCTTGTATAACCTGGGCACTTTGACTTCTACCACCTTAAATTACTAACCCTGTATAAAATACTGCTGTAAATGGCAGCTCATGGAGTAAACTTGTAAAATTATTTGTTTCAGTCTTGGATCTGAGCTTCCATTGAACAGTGGTGTTTTAGTCTTTCAACAAGTCATATTTGCTGTTGGTGCTGGGATTGATTAATTTGATTTTGTATTGCTCTCAAG
Seq C2 exon
GCTAGAGCTAATGGTCTGCAGTCCTGTGTGATTATCATTCGTATTCTTCGTGACCTCTGTCAGCGTGTTCCAACTTGGTCTGATTTTCCAAGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003235:ENSGALT00000005121:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.242 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF075289=DZF=FE(12.9=100)
A:
NA
C2:
PF075289=DZF=FE(12.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACCTCGGGTATGGTGAAAGAC
R:
CCAGCTTGGAAAATCAGACCA
Band lengths:
190-1012
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]