GgaEX1003130 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1N855]
Coordinates
chr1:161032378-161038505:-
Coord C1 exon
chr1:161038364-161038505
Coord A exon
chr1:161033301-161033398
Coord C2 exon
chr1:161032378-161032473
Length
98 bp
Sequences
Splice sites
3' ss Seq
GCCAATTCAATCCATTTTAGATA
3' ss Score
7.11
5' ss Seq
CAGGTTCGG
5' ss Score
6.2
Exon sequences
Seq C1 exon
GTAATAAGTCCTGAGAAATACGATATCAAGTGTGCAGTCCCAGAAGCAGCAATAATTTTAAATTCATGTGTGGAACCCAAAATGCAAGTTACTATCACACTGACATCTCCAGTAATTCGGGAGGAGAACATGAGGGATGGAG
Seq A exon
ATATAACCTCGGGTATGGTGAAAGATCCACCGGACGTCTTGGACAGGCAAAAATGCCTTGACGCTCTGGCTGCTCTACGCCACGCTAAGTGGTTCCAG
Seq C2 exon
GCTAGAGCTAATGGTCTGCAGTCCTGTGTGATTATCATACGTATTCTTCGTGACCTCTGTCAGCGTGTTCCAACTTGGTCTGATTTTCCAAGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014545_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.042 A=0.212 C2=0.000
Domain overlap (PFAM):
C1:
PF075289=DZF=FE(18.9=100)
A:
PF075289=DZF=FE(12.9=100)
C2:
PF075289=DZF=FE(12.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGTCCCAGAAGCAGCAATA
R:
GTTGGAACACGCTGACAGAGG
Band lengths:
183-281
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]