DreINT0178440 @ danRer10
Intron Retention
Gene
ENSDARG00000039730 | zgc:112160
Description
zgc:112160 [Source:ZFIN;Acc:ZDB-GENE-050417-229]
Coordinates
chr7:34794487-34794980:-
Coord C1 exon
chr7:34794914-34794980
Coord A exon
chr7:34794591-34794913
Coord C2 exon
chr7:34794487-34794590
Length
323 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGG
5' ss Score
7.61
3' ss Seq
CTCTTATGTGTTTTCTTCAGGCT
3' ss Score
10.39
Exon sequences
Seq C1 exon
GTCTTCGTGTCTACAATGGCTTTCCTGTGGCTGCTGTCCTGTGTTGCCTTCTTTAGTGCAGCCTATG
Seq A exon
GTGAGGAAATGTTTTTTTCAACGCCCATACTTACAGTGACTGAAAATATCTGCTATCATCTTCTGCTAAAAAATCTGCTGGTTAGATTTATATCTTTATGTTGCTTTAAGTTTATCAGATTTCAAGTATTTTTTTAAGCTATGCAACGTTTGATATGTTTAGTCTGTATGATTGATATGAGTTAAGATGACATGAAAAGTTAATTTATATCAATTTAAGGCAGCAGGATTTTTTACAGTGCAAAAACATTGGCCAAATGGCCTATTTATACAACACTAGCACTCATTATTTACAGCCTTGGATCTCTTATGTGTTTTCTTCAG
Seq C2 exon
GCTGTGGCGTTCCTGCCATTCCTCCTGTTGTCAGTGGTTATGCCCGCATTGTGAACGGTGAGGAGGCAGTGCCTCACTCCTGGCCCTGGCAGGTGTCTCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000039730:ENSDART00000058067:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0008921=Trypsin=PU(8.0=51.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]