RnoINT0043249 @ rn6
Intron Retention
Gene
ENSRNOG00000019068 | Ctrb1
Description
chymotrypsinogen B1 [Source:RGD Symbol;Acc:2444]
Coordinates
chr19:43908666-43911057:-
Coord C1 exon
chr19:43910969-43911057
Coord A exon
chr19:43908770-43910968
Coord C2 exon
chr19:43908666-43908769
Length
2199 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
3' ss Seq
GGCTACTATTCCCTTCCCAGGCT
3' ss Score
6.74
Exon sequences
Seq C1 exon
GGGTAGGCAAGCTTCACTCACTCCCTTGACCAGCACCATGGCATTCCTTTGGCTCCTGTCCTGCTTTGCCCTTGTGGGGGCCACCTTTG
Seq A exon
GTAAGTGCTGGGGCTCAGCTGACCCAGCCAGGCACCATCAGAGGGGAAGAGGGCAGAGGGGTTATCCTGAACTAGCTGATCCCCTGCCCTTCCTGTTTGAATATCATCTAAGGACCAGTACCCTGAAGCCTCAGGGAGGACAGGGTCCTCCTGGGACTTTCTGGGCTTATGCCCTGCTTCAGGAGCAAAAAGACCTGCCTGGGTCCAGCTGTGGTCTGTAGATCCAGATGTAGATGAGGTAGGGGTAGCCCAGCAGGAGCTGGCTGGCAGATGCTAAGGATTTCGCTTTCTTTCTGTTGCTTGCTTTTATGTTTTATTGTTTGAGACAGGATCGCACTCTGTAGCCCAGGTTAGCCCAGAGTTTATTGTGTACCCCAGGCAGGTTCAGACTTAGAGCAAGCCTCTTGCCGAGGCCTCCTGAGTGGGTTAAAGACTCACACTACCACCTCCAGTTTACTATTTTGCTTTCCATTTATATAAAGATGAAAGACAAAAGGGGCTGGAGAGATGGCTCAGTGGTTAAGAGCAATGACTGCTCTTCCAGAGGTCCTGAGTTCAAATCCCAGCAACCACATGGTGGCCCACAACCATCTGTAATGGGATCTGATGCTCTCTTCTGGTGTGTCTGAAGACAGCTAAAGTATACTCATATCTAATAAGTAAATAAATCTTTTTAAAGGGTGGGGGAGATTATCTAGAGGTTGGGTACACGCCTGTAGTCCTAGCGTTTGGGAAACAGTTGCTTCTTGCAGAGATGGGGTCTCTTGCAGTGCATCCTGGTCCTCCTGCCTCTGTCTCCCCTACGCTAGGATTGCAGGCCTGTGTCCCCCATAGGCATCCCTTGTCCCACTGCCATTTTTCTTTTATTGTTGTTGCTGGCTTTATCCTGAAACACCGTCTTACCCAGTTGCTCAACCTGCAACTCCTGGGCTCAAGCCATTCTCCTGCTTCAGCCTTCAGAACATCTGTGACTGCAGGCATTTGCTGCTAATCGAGCTAACCCAAATTCGAATGAGCTCCCTCCCTTGTCCTGTTGAGTCATCTCTCTTTAGGCTCACACAAATACACTGCATATTTATACGTCCATAAGCAAAGAGCCTTAAAATTACATGCACAGTAGTCGTCTGTGTCAGCTTTACAATATGCTCTTTTTCCACTCATAAAGTGGGAGATCCAGCCACGTCGCCATGGAAACCCAGCTCACTCACTTAAACACACTCCGCTGTGAGAACACGTCACTCCCGTTTCTCATTTTGTGGCTGGTATAAAAATAGTTGCTTGTGACTTTACGAGGTATTTCAGTCATCAGTGGAGAATCTTGTCCGTTTCCTAGTCTCTGTGCTCAAGAGAGGCAGGTGCTAAGCCCTTGAGCCGGTCAGAGGACTTCCAAAGGAGAGAGGCTGGTCGCAGGGGCCACTGGACAACCAAACTGTGAACGTCCGTCAGCCAGTGTAGCAAGCGTGTCCTGGCATGTCCGAGACGCCTGACCACTCCTGCTGCTCTCTCTCTCTTCTGTGATGTGTTTTTTCACGGCGTAGATTTAAGGTCCCCCTTCTCTTCCTCTTCTCTTTCTTTTCTGTCTATCTTTTTTAAATTGAGACAGGGCCTCACTATGTAGCCCTTTCTGGCCTGGAACTCTCTATGTAAATCAGGCTGGCCTTAAACTCAGAGATCTCTCCGCCCGTCTCCTGAGTGTTGAGGGCAAAGAAGTACACCAACACACGTGGAACAAAGTCTAATTTTTTTTTTAATTAAGGAACAAAGCTAGGCGGTAGTGATGTCCCCCCACCCCCACCCCTTTTAATCCCAGCACTGGGGAGGCAGAGGCAGGGGATCTTAGAGTTTGAAGCCAGCCTGGTCTCCAGAGTGAGATCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTAGCTACCGAAATAGGCAAGTGCCACAGAAATGGCCAGCCTGGAGGTTGAACCAGACAGCCTGTTGGTCCAGTTCGTTTTCTGCTCCTTCTCCTGTGACACACCTGGATGGGGGCAGCTGTGCCTCTCTTCATCCCTGGAAAGATAACCAGGGTCAGCAGGCTCCGTGTGAGAGACCCCTGAGCCAAGAGGTTTAAGGGGAGCCAGATGTTTCCAGGGGAGGTGGTGTGGTCTCAGTGGGGTCCGGAGTCGGCTGAAGCGTTCTACAACATGGCTACTATTCCCTTCCCAG
Seq C2 exon
GCTGTGGAGTCCCTACCATCCAACCCGTGCTGACTGGCCTGTCCAGGATCGTCAACGGAGAGGATGCTATTCCCGGCTCCTGGCCCTGGCAGGTGTCTCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019068:ENSRNOT00000026017:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0008921=Trypsin=PU(8.1=51.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]