DreINT0178844 @ danRer10
Intron Retention
Gene
ENSDARG00000093844 | zgc:136461
Description
zgc:136461 [Source:ZFIN;Acc:ZDB-GENE-060519-7]
Coordinates
chr7:34797083-34797620:+
Coord C1 exon
chr7:34797083-34797161
Coord A exon
chr7:34797162-34797439
Coord C2 exon
chr7:34797440-34797620
Length
278 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGG
5' ss Score
9.26
3' ss Seq
TCCATATTTTCTTTACAAAGGTT
3' ss Score
7.13
Exon sequences
Seq C1 exon
GACCTCTCACCGTGTCATCCTGGGTGAGCATGATCGTTCCTCCAATGCTGAGCCCATTCAGACCATGACCGTTGGAAAG
Seq A exon
GTATGGTGAACTCTAAAAAATGCTAGGTCATTGTTACTCCATGTTGGGTCAAATTTAGATAAATCCAACAGTTGGGTTAAAACGTGTCATTTACATGGTTTAAATGTTGGGTTTGTCCATATTTAACCCAATGCTGGGTTAGGACAAACAGAGTGGATATTATAAGTAACACACTTATGTCAATTAGATAATAATTTAACACAGATGAGAAATCTGCTGCTGCAAGACAGGATAATTGGTCAATGGAATGCTTACATGTCCATATTTTCTTTACAAAG
Seq C2 exon
GTTTTCAAGCATCCTAATTTCAACATGTTCACCATCAACAATGACATCCTGCTGATCAAGCTGGCCACTCCTGCTAAGATCAACACTCATGTGTCTCCTGTGTGTCTCGCCGAGACCAACGACAACTTCCCTGGTGGCATGAAGTGTGTGACCTCCGGATGGGGCCTGACCAAACACAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000093844:ENSDART00000022139:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(11.7=100)
A:
NA
C2:
PF0008921=Trypsin=FE(26.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCTCTCACCGTGTCATCCT
R:
CATTGTGTTTGGTCAGGCCCC
Band lengths:
260-538
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]