MmuINT0043657 @ mm9
Intron Retention
Gene
ENSMUSG00000031957 | Ctrb1
Description
chymotrypsinogen B1 [Source:MGI Symbol;Acc:MGI:88559]
Coordinates
chr8:114212445-114213119:-
Coord C1 exon
chr8:114213041-114213119
Coord A exon
chr8:114212626-114213040
Coord C2 exon
chr8:114212445-114212625
Length
415 bp
Sequences
Splice sites
5' ss Seq
CAGGTACAC
5' ss Score
7.29
3' ss Seq
TGAGCTTCTTGTCCCCACAGGTT
3' ss Score
11.65
Exon sequences
Seq C1 exon
GACAACCGATGTGGTGGTAGCTGGAGAGTTTGATCAGGGCTCCGATGAAGAGAATGTCCAGGTCCTGAAAATCGCTCAG
Seq A exon
GTACACAGACTGATGGATGCGTCAGGGGCTCAGTTCACAAGATGGGCGAGCACGCCCGGGAAGAAGCCCTTGGCTCCTTAAAGGACAGGAACACAGTGGAGCTGGGGCCGGTCTTAGAATTCTCTTTCTTATTTTTGTTATTTTGGTTTTTGGTTTTTGGTTTTCCAAGACAGGGTTTCTCTGTACAGCCTTGGCTATCCTGGAACTCACTCTGTAGACTAGGTTAGCCTTGAACTCAGAAATCTGCCCGCCTCTGCCTCCCGAGTGCAGGATTAAAGGCGTGCGCCACCACGGGCTCTTCTCGATCTCTTCTGATGGGGCCAAAAGGGAAGAAGCTTGTCCCCTGGAACCCAGCAGAGCCCAGGTGTCCCCTCCCCGCGCCCCCAACGCTTAGTTGAGCTTCTTGTCCCCACAG
Seq C2 exon
GTTTTTAAGAACCCCAAGTTCAACTCCTTCACCGTGCGTAATGACATCACCCTGCTGAAGCTGGCCACTCCTGCCCAGTTCTCTGAGACTGTGTCTGCCGTGTGTCTGCCCACTGTTGACGATGACTTCCCTGCTGGGACACTGTGTGCCACCACTGGCTGGGGCAAGACCAAATACAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031957-Ctrb1:NM_025583:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(11.7=100)
A:
NA
C2:
PF0008921=Trypsin=FE(26.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGATGTGGTGGTAGCTGGAGA
R:
CATTGTATTTGGTCTTGCCCCA
Band lengths:
254-669
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: