DreINT0180298 @ danRer10
Intron Retention
Gene
ENSDARG00000010782 | zgc:55621
Description
zgc:55621 [Source:ZFIN;Acc:ZDB-GENE-040426-762]
Coordinates
chr15:35098473-35098755:+
Coord C1 exon
chr15:35098473-35098580
Coord A exon
chr15:35098581-35098671
Coord C2 exon
chr15:35098672-35098755
Length
91 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
3' ss Seq
TTACTTTGTCTTGTACACAGATC
3' ss Score
8.88
Exon sequences
Seq C1 exon
ATTCAAGTTATTTTAAGCATTTTTTTCCTATATTCATCAAGTCAAGATTGTACCATTTTTGTTATACTTCATTTGGACAAAAGATATCAATCTGCAACTACTGGAATG
Seq A exon
GTAAGTAGATGTGCAACTTTCGTACAACAATTTGATCACTACTCGCTTTGCATTTCAACAATATGCATCCGTTACTTTGTCTTGTACACAG
Seq C2 exon
ATCCTCATCAAAGAGAAAGATACTTGAAGAACAGCGTCTTTCTGGCCCCGCTGAATGGGGAAGTAAACCATGATAACTCAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000010782:ENSDART00000156515:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0208910=Palm_thioest=FE(13.8=100)
A:
NA
C2:
PF0208910=Palm_thioest=FE(10.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTCATCAAGTCAAGATTGTACCATT
R:
GTTGAGTTATCATGGTTTACTTCCCC
Band lengths:
159-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]