DreINT0180389 @ danRer10
Intron Retention
Gene
ENSDARG00000098099 | zgc:64065
Description
zgc:64065 [Source:ZFIN;Acc:ZDB-GENE-040426-1355]
Coordinates
chr6:8921959-8922463:+
Coord C1 exon
chr6:8921959-8922120
Coord A exon
chr6:8922121-8922288
Coord C2 exon
chr6:8922289-8922463
Length
168 bp
Sequences
Splice sites
5' ss Seq
GTGGTACGT
5' ss Score
8.61
3' ss Seq
CTTTTCCCCTTTTTATGAAGCCT
3' ss Score
5.63
Exon sequences
Seq C1 exon
GAGGCAATGGAAGAAGTCGATACATGGTTAGGAAAGCACTCTAAGGAGGTAGTCATCCTTGCTTTCTCACATTTCAAGAAAATGTCAACTGAACAACACACAAAGCTGATGACGTTCCTCAAAGACCATTTCAAAGCCAAACTCTGTCCTGATTATGGAGTG
Seq A exon
GTACGTATTGTACTGTATCATTCATGATAACCATCCATCACATCCTTCACTCTTTAGCAGTTAAGAACTGAGAAATAGATCATTCATTGACCTCAGCTTTTTGTAGAAGTCCTTCAGTCGATGTTTTAACCATTGAAACATTTTTCAACTTTTCCCCTTTTTATGAAG
Seq C2 exon
CCTTCACTCAAGGACTGCTGGGATAAAGCCTATCAGGTTATCCTCTCTTATGATGACAGAAATCGAAAACAGGATCGTGTTTTGTGGCCTGGAATTAAGTACTGGTGGGCTAATAATTCAGACCCCAATGAGGCCATTTTATTCCTCGATAACAAGAAACAATCAGGCAGACCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000098099:ENSDART00000168727:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0038814=PI-PLC-X=FE(32.5=100)
A:
NA
C2:
PF0038814=PI-PLC-X=PD(10.4=28.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGCAATGGAAGAAGTCGAT
R:
TCCAGGCCACAAAACACGATC
Band lengths:
255-423
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]