DreINT0181013 @ danRer10
Intron Retention
Gene
ENSDARG00000027353 | zmym2
Description
zinc finger, MYM-type 2 [Source:ZFIN;Acc:ZDB-GENE-030131-2408]
Coordinates
chr9:21623408-21625455:-
Coord C1 exon
chr9:21625310-21625455
Coord A exon
chr9:21623523-21625309
Coord C2 exon
chr9:21623408-21623522
Length
1787 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
TATTTTTTGCACATTTGTAGCAT
3' ss Score
6.19
Exon sequences
Seq C1 exon
CAGTTAGTTTAAAAAGCAGTCTCCTGTCCCTGAGCCAAGAAGAGTTGAATCAGTCTTTATCCCGGTTTGTCAAAGAAGTACGTCGTCCCAATGGTGAACACTACAGTCCAGACAGCCTCCTTTACCTCTGTCTGGGTATCCAGAAG
Seq A exon
GTGAGTTGTCAACATGATTTTTGCCCACCAAAGCTGTAATTGGAAATCTTGAGAATTATAAAACCTTGAATGTTTGCTATTACATCTCCTTGTGTGCTTTTATAAATTAAGAAATCATTGAAGCTTTCCCTTCAAATTATTAGTTATTGATTATTGGTTTTAATGTCATGAAGTCTTAAATTTGTCTGCAGAAATCCAATGTTTCCTAATGACCAATATGGGATGCTACACATGCGCACGCACGCACACACACACACACACACTCACGCACATACAGTCTGTCCAAAAAAGTCAACATACTGTCTGTTCACCACATGGAATTAGCTAAGCAAATGGGTAAAGATAATTACTGGACGGAGCTAGTAAAAAGTGATTTCAGATTGATGCAGAGCTTCTAATTTCTAATAGAAACCATTCAGAAAATGAATCCTGTTGTTATGGAAAATATATTAATCTTTTTCAGAAAGGTTAAATTGTTGGCATTGTTCATCTGAGGAGATTGCTAAAACTACTAAAATTAAATAAAGAGCTGTCCAGTATTAAAACTGAAAGGTTAGTATCGAACCATCATCTTTGTAACAAAAAGGCTTTGTTGCCTTAAGAAGTCAGCAATCACTTAAACATCTGGTGAAATCAAACTGTGAAGAACAACTGTAGGGCTCACAGCATTGTTTAATAGTAAAAGTAAAAGCTTTTCCACATGCACAATGGGAAGGGAACTCAAGGGATTGGAACAAAAAGGCTGTGTTGCCTTAAGAAAAACATTTATCGGTTACGCTAATAGGGGGAAAGGCTTCAGTTTGCTAGGACAAATAAAGATTGGACTCTGAAGCAATGGGAAAAAGATCATGCGGTCTGATGAATCCAGATTTGCCCTGATACAGAGTAACGATGAGTCCATCAGAATAAGAAGAGAGGCCGATCAAGTGATGCACTAATCAGTCCTAGTTCTTGCCATATAAGCCTGTAGGAGCAGTGCTGGGCATGCTACACCTGGTCAGGTCTAGCATTAGCTTTGTTCTGCGCTTGAAGAATGAAGTCAGCTGACTACCTGAATATATAACAGTTATATACAGGTTAAACAAAAAATTTATTCATATATTTTTTTTCTCCCCTGATAGTAAAGGCTTAATCCACAATGATTCATTTTGCTCAAATTGTGAAAGATTGTTTCAGGGAGCAAGAGACATAATTTTTACACATGAACTGGCCTTCAAAGTGTCCAGACCTTAACCCTGTTGAGTATCTGTAGATGTGCTGGAGAAGACTGTACAGTAGTGTGACTCTCCCATCATCAATACAAGACCTGGGTAAAAAAATGCAACTCTGGATGATAATAAAGGTTGTTAGATTGTAGAATCATATTGAAAAGATTCCATGCTTATTATGTGCCATAATCAGAGCTAAAGATGATCCAACAAAATATTGCAGACTGACTTTTGGACAGGCAGTTTATGCATCCCAACATTAAAATAATCTTGGCGGAATCCTTATTAAAATTACAAGTTTTAACTTCTTGTTTTTCTTTTTTCCCCACTGTTTAAAAATTATATGCTGCCAAACTAAACAAAATCAAGTAAACTAGATCTAGTTTTAAGCACTCCAGATCTAAGCAGTGTCCATTGATTATATCATTTGCTGTTCACATCCTGAAACAAGATGTTGATGCTTTTGCTATGAGGACACATAATACTGCTTATTGAAAACTGACCCACTCTCACCTTTATTAAATCCACATGTTTTGCAATGCATTAGTGTATTCATATATATTTTTTGCACATTTGTAG
Seq C2 exon
CATTTGCAGGACAAAGGAAGGACAGATGACCTCTTTAATGACTCACAGTATGAAATGTTTGGGGAGGAACTGAACAAGCTCCTCAAAGACTGGCAACCCAGTGTTCTTCCGGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000027353:ENSDART00000133469:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.184 A=NA C2=0.026
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF120123=DUF3504=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTAAAAAGCAGTCTCCTGTCCCT
R:
CATCCGGAAGAACACTGGGTT
Band lengths:
254-2041
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]