GgaALTA0000039-2/3 @ galGal3
Alternative 3'ss
Gene
ENSGALG00000000156 | BRD2
Description
NA
Coordinates
chr16:73358-73890:-
Coord C1 exon
chr16:73636-73890
Coord A exon
chr16:73495-73518
Coord C2 exon
chr16:73358-73494
Length
24 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
AGCTGGCTGCCCTCTCACAGGGC
3' ss Score
7.44
Exon sequences
Seq C1 exon
GATGTCTTTGAGTTCAGCTACGCCAAGATGCCTGATGAGCCGCAGGACGCCAGCCCACCCTCAGTGTCTGCCCCACTGCTTGGAGCCCTCTCCAAATCCTCCTCCGAGGAATCCTCCAGCGATGAGGATGATGAAGATGAAGATGATGAGGATGATGATGAGGATGAGAGCAGTAGTGAGAGCTCATCAGAGAGCGAGGAGAGCTCTGACTCGGAAGAGGAACGTGCCAACCGCCTGGCAGAGCTGCAGGAGCAG
Seq A exon
GGCCCCGTTTCCAAACCCAAAAAG
Seq C2 exon
AAGCGGGAGAAAAAGAAAAAGAAGAAATCAGAGAAGCACAAAGGGCGAGGAGGAGATGAAGAGAGCCGGGCGCGTCAGGCGCAGCTCCGCAAAGCCAAGAAGGGCGGCGGCGGGGGGAGCGGCGGGGGCAGCTCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000156-18-20,18-19,18-18-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.953 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF031159=Astro_capsid=FE(49.4=100)
A:
NA
C2:
PF031159=Astro_capsid=PD(34.1=86.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAGAGCTCTGACTCGGAAG
R:
CGCCCTTTGTGCTTCTCTGAT
Band lengths:
106-130
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]