GgaEX1011520 @ galGal3
Exon Skipping
Gene
ENSGALG00000000156 | BRD2
Description
NA
Coordinates
chr16:72964-80176:-
Coord C1 exon
chr16:80039-80176
Coord A exon
chr16:75200-75306
Coord C2 exon
chr16:72964-73268
Length
107 bp
Sequences
Splice sites
3' ss Seq
TTCCCTCTCCTCTTTTCCAGAGC
3' ss Score
11.99
5' ss Seq
CCTGTGAGT
5' ss Score
7.21
Exon sequences
Seq C1 exon
GATTACCACAAGATCATCAAGCAGCCCATGGACATGGGGACGATCAAACGGCGCTTGGAGAACAACTACTACTGGGGGGCAGCTGAGTGCATGCAGGACTTCAACACCATGTTCACAAACTGCTATATCTATAACAAG
Seq A exon
AGCTTCACAATGAGACACAAAGGCAGCTCCCCCCACTGGGTTGGCCTCTCCCGGGAAGGCAAAGAGCATCCATGGGAATGGGTGAACCGCTCTCCTTTGTCTCACCT
Seq C2 exon
GAACTCAAAGAAAGCAGCAAAAGCGGCGCTGCCGCCTCCGCCCGCGCTCTACGATTCGGAAGAGGAAGAGGAGAGCAAACCGATGACGTACGATGAGAAGAGGCAGTTGAGCCTGGACATCAACAAACTGCCCGGGGAGAAGCTGGGCCGTGTGGTGCACATCATCCAGTCCCGGGAGCCCTCACTGCGTGATTCCAACCCCGAGGAGATTGAGATCGACTTCGAGACCCTCAAACCCTCCACACTGCGTGAGCTGGAGCGCTACGTGCTGTCCTGCCTGCGGAAGAAACCCCGCAAACCCTATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000156-'3-21,'3-12,13-21=AN
Average complexity
A_C3
Mappability confidence:
96%=92=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.845
Domain overlap (PFAM):
C1:
PF0043920=Bromodomain=FE(52.9=100)
A:
PF0005916=Lectin_C=FE(35.4=100)
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCAAGCAGCCCATGGACATG
R:
TTGATGTCCAGGCTCAACTGC
Band lengths:
246-353
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]