GgaINT0123636 @ galGal3
Intron Retention
Gene
ENSGALG00000000156 | BRD2
Description
NA
Coordinates
chr16:78415-78988:-
Coord C1 exon
chr16:78890-78988
Coord A exon
chr16:78461-78889
Coord C2 exon
chr16:78415-78460
Length
429 bp
Sequences
Splice sites
5' ss Seq
AAGGTCTCG
5' ss Score
0.08
3' ss Seq
ATTACTTATGCTGATTTAAGGCA
3' ss Score
3.43
Exon sequences
Seq C1 exon
TATTCCAGCTGCCGAGGCATCGGTTGGCACAGAATCACCAAATATTGCCTTTCTTCCCCCATCCCCGCTTATCAGCCAATGCTCTCTGACCCCTAAAAG
Seq A exon
GTCTCGATTTGGGGTCTTTTTGTTGTTGTTGTTGTTGTTCTGGGTATTTTTAGGCTTTTATTATCAGCGATTTTTCAGCTTCTCACTGCTTACCCCCCAGCTCAGCACCGCGTCGCTCACTGCCATCGCTGAACCCAGCGGCGTTTCCATCCCTCAGAGAGCAGCAAAATGAGACATCGGCCGTCGTGCACGGAAGGGAAAGGCTGTAGGGTACATCTACCCTTATTTCTTGGGTTTGTGTTTTGTTTTGTTGTTATTTAAAAGCAAAACCAAGACAACAAAGCCCAGCCAATGCCATTTCCTGGCAGTGGACGCAGGCGCAGGCGGGTTGGTCACAAAGCAAGAAGTTGCTGCGGGACTTTGTCGTTTTGGGGCCGTTCTCGTGAACTTCTGAGCCATGGATGAGGAAATTACTTATGCTGATTTAAG
Seq C2 exon
GCATCCTACGGGCAGTTTGCCTCCTGCTAAGCGGCAGCGCGGTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000156:ENSGALT00000000212:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.559 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]