GgaINT0123634 @ galGal3
Intron Retention
Gene
ENSGALG00000000156 | BRD2
Description
NA
Coordinates
chr16:79046-79511:-
Coord C1 exon
chr16:79406-79511
Coord A exon
chr16:79151-79405
Coord C2 exon
chr16:79046-79150
Length
255 bp
Sequences
Splice sites
5' ss Seq
AAAGGAAGA
5' ss Score
-0.73
3' ss Seq
TCTTTGCCTGCTCTGGTCAGGAT
3' ss Score
6.48
Exon sequences
Seq C1 exon
CCCTTATTCCCGCAGACCCCATGCAGAACCACACACATCTCCATCCTCTCCTCCGTTGGCAAGGAATGGGTTTGCAAAGGGATGGGCACAACCAGCAATATGCAAA
Seq A exon
GGAAGAGGTGTCGAAAGTCTGGGGAGCAATGAATCTGTCCCCCGGAAGATGTTTCCATGGGGCAGTTAAGGAGGGGAATTGGAAATGAAGCAGATGATGCAGCAATGAAACTATCCCAGAAAAGGGGGAAAAAGCAATTCTGGTAATGAAGATACATAAAGGAGAAGGGCTTCTCGCTGTCTGGACGCAGTTCTGTTGGTTAACGTCTTTTCTCTTTGTGCTCTTTGCACTTTTTTCTTTGCCTGCTCTGGTCAG
Seq C2 exon
GATGAGGCAGAGCCCTCACGGGGCCCTTTCACACCTTTTTTTAGCACACAGAAGCGCAGCGGCCGTCTCAGCACCCAGCATGGAAGAGAAGGGACTGCAAATAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000156:ENSGALT00000000212:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.472 A=NA C2=0.639
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTATTCCCGCAGACCCCATG
R:
TTGCAGTCCCTTCTCTTCCATG
Band lengths:
204-459
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]