GgaEX1011520 @ galGal4
Exon Skipping
Gene
ENSGALG00000028659 | Blec1
Description
C-type lectin domain family 2 member E [Source:RefSeq peptide;Acc:NP_998747]
Coordinates
chr16:104372-105427:-
Coord C1 exon
chr16:105255-105427
Coord A exon
chr16:104812-104918
Coord C2 exon
chr16:104372-104513
Length
107 bp
Sequences
Splice sites
3' ss Seq
TTCCCTCTCCTCTTTTCCAGAGC
3' ss Score
11.99
5' ss Seq
CCTGTGAGT
5' ss Score
7.21
Exon sequences
Seq C1 exon
TGCAGGCATTCCAGCCCCATCCCCAGCCCTGTGCTCAGTGTCCCTTCGACTGGATTGGATTCAGAGGAAAATGCTACTACTTTTCAGAGGATGAGAGCAATTGGACGAGCAGCCAGAACAACTGCTCTGCACTTGGTGCTTCCTTGGCTGTGTTTGACAGCGCTGAGGACTTG
Seq A exon
AGCTTCACAATGAGACACAAAGGCAGCTCCCCCCACTGGGTTGGCCTCTCCCGGGAAGGCAAAGAGCATCCATGGGAATGGGTGAACCGCTCTCCTTTGTCTCACCT
Seq C2 exon
GTTCCAGGTGCAAGGTGATGGTCTCTGTGCATACCTGGGGGATGCCGGGCTCAGCTCCTCCCACTGCAGCGCGCGGAGGAATTGGGTTTGCACCAAACCCGCGTTGCAAAAACCGAGGAAGAACTTCTGCATCAGCACCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000028659-'4-4,'4-3,5-4
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.028 C2=0.000
Domain overlap (PFAM):
C1:
PF0005916=Lectin_C=PU(28.1=46.6)
A:
PF0005916=Lectin_C=FE(36.5=100)
C2:
PF0005916=Lectin_C=PD(33.3=66.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCCCTTCGACTGGATTGGA
R:
CTTCCTCGGTTTTTGCAACGC
Band lengths:
256-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]