GgaALTA0000232-2/2 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000000637 | ZBTB48
Description
zinc finger and BTB domain-containing protein 48 [Source:RefSeq peptide;Acc:NP_001038107]
Coordinates
chr21:572774-573491:-
Coord C1 exon
chr21:573405-573491
Coord A exon
chr21:572892-572928
Coord C2 exon
chr21:572774-572891
Length
37 bp
Sequences
Splice sites
5' ss Seq
GCGGTAAGG
5' ss Score
9.63
3' ss Seq
GCTCTCCTATGGACTTGCAGTGC
3' ss Score
6.64
Exon sequences
Seq C1 exon
TGCTCCTCCTGCGTGCAGCAGTTCATGCAGAAGAAGGACCTGCAGAACCACATGATAAAGTTGCATGGCGCACCAAAGCCCCATGCG
Seq A exon
TGCTCAAGTTGCTCCAAGTGCTTTCTGTCTCGGACAG
Seq C2 exon
AGCTGCGCCTGCACGAGGCATTCAAACACCGGGGAGAGAAACTGTTTGTCTGCGAGGAGTGTGGACACAGAGCCTCAAGTCGCAACGGCTTGCAGATGCACATCAAGGCCAAGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000637-7-10,7-9-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.034 A=NA C2=0.096
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=PU(59.3=55.2)
A:
NA
C2:
PF134651=zf-H2C2_2=PD(33.3=17.3),PF134651=zf-H2C2_2=WD(100=51.9),PF134651=zf-H2C2_2=PU(37.0=19.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAGGACCTGCAGAACCACA
R:
CACACTCCTCGCAGACAAACA
Band lengths:
119-156
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]