GgaALTA0000426-2/2 @ galGal3
Alternative 3'ss
Gene
ENSGALG00000001040 | MEGF6
Description
NA
Coordinates
chr21:998937-999346:+
Coord C1 exon
chr21:998937-999131
Coord A exon
chr21:999215-999217
Coord C2 exon
chr21:999218-999346
Length
3 bp
Sequences
Splice sites
5' ss Seq
AAGGTTTGG
5' ss Score
5.28
3' ss Seq
GCCCCTGTCCTGTCCCAAAGCAG
3' ss Score
5.91
Exon sequences
Seq C1 exon
TAACTGAGGAGATGTGGGGTTTCAGAGGGAACAGCTCGGTGCTTCTCTCTGGATGCTCCCTTCCAGGTTGTCCCCCGGGTTTCCATGGGACCGACTGCCAGCAGCACTGCGACTGTGCCCATGGAGCTGCATGTGACCCGGCCACCGGCCACTGCCACTGCCCCGTGGGGCTGCGGGGTCACCGCTGCCAGGAAG
Seq A exon
CAG
Seq C2 exon
GCTGCGAGGAGGGGACGTATGGGGAGGGATGCCGGCAGCGCTGTGACTGCGTGGGGAACGCACCCTGTGACCGCATCACGGGGCACTGCCTCTGTCCTCCGGGAAAAACCGGCCCCCGCTGTGACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001040-32-34,32-33-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=WD(100=73.3)
A:
NA
C2:
PF0005319=Laminin_EGF=WD(100=73.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGGAGCTGCATGTGACCC
R:
CATCCCTCCCCATACGTCCC
Band lengths:
107-110
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]