GgaINT0134985 @ galGal3
Intron Retention
Gene
ENSGALG00000001040 | MEGF6
Description
NA
Coordinates
chr21:998937-999346:+
Coord C1 exon
chr21:998937-999131
Coord A exon
chr21:999132-999214
Coord C2 exon
chr21:999215-999346
Length
83 bp
Sequences
Splice sites
5' ss Seq
AAGGTTTGG
5' ss Score
5.28
3' ss Seq
GCCCCTGTCCTGTCCCAAAGCAG
3' ss Score
5.91
Exon sequences
Seq C1 exon
TAACTGAGGAGATGTGGGGTTTCAGAGGGAACAGCTCGGTGCTTCTCTCTGGATGCTCCCTTCCAGGTTGTCCCCCGGGTTTCCATGGGACCGACTGCCAGCAGCACTGCGACTGTGCCCATGGAGCTGCATGTGACCCGGCCACCGGCCACTGCCACTGCCCCGTGGGGCTGCGGGGTCACCGCTGCCAGGAAG
Seq A exon
GTTTGGTGCCCCCCAACCCCCCCCCCCCCACCGTGTCCCAGAGCCGTTTGGCACAGCCGTGGTGCCCCTGTCCTGTCCCAAAG
Seq C2 exon
CAGGCTGCGAGGAGGGGACGTATGGGGAGGGATGCCGGCAGCGCTGTGACTGCGTGGGGAACGCACCCTGTGACCGCATCACGGGGCACTGCCTCTGTCCTCCGGGAAAAACCGGCCCCCGCTGTGACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001040:ENSGALT00000001544:31
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=WD(100=73.3)
A:
NA
C2:
PF0005319=Laminin_EGF=WD(100=73.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGCTCCCTTCCAGGTTGTC
R:
CATCCCTCCCCATACGTCCC
Band lengths:
178-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]