BtaINT0091712 @ bosTau6
Intron Retention
Gene
ENSBTAG00000020839 | MEGF6
Description
multiple EGF-like-domains 6 [Source:HGNC Symbol;Acc:HGNC:3232]
Coordinates
chr16:50801942-50802287:+
Coord C1 exon
chr16:50801942-50802070
Coord A exon
chr16:50802071-50802158
Coord C2 exon
chr16:50802159-50802287
Length
88 bp
Sequences
Splice sites
5' ss Seq
GGGGTAAGT
5' ss Score
9.65
3' ss Seq
TGAGCCAGTGCCCCTTCCAGGGT
3' ss Score
3.43
Exon sequences
Seq C1 exon
CCTGTCCCCCCGGCTTCCATGGGGCTGGCTGCCAGCAGACGTGCCAGTGTCAGCATGGCGCCCCCTGCGACCCTGTCAGCGGCCAGTGCCTCTGCCCTGCTGGCCTCCATGGCCAGTTCTGCGAGCGGG
Seq A exon
GTAAGTGTCTGCACCCCCACTCACTCCCACCCGGTCGGTCCCCCCGCCCTGGGCTCAGGACAGGATGCTGAGCCAGTGCCCCTTCCAG
Seq C2 exon
GGTGTGAGCCGGGCTCGTTCGGAGAGGGCTGCGGCCAGCAGTGTGACTGCGAGCTTGGGGTGCCCTGTGACCCCGTCACCGGCCACTGCCTGTGCCCCCCTGGGCGCACAGGGACCACCTGTGACCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020839:ENSBTAT00000027771:34
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PD(34.8=36.4)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCCATGGGGCTGGCTG
R:
CCCAAGCTCGCAGTCACAC
Band lengths:
175-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development