GgaINT0134985 @ galGal4
Intron Retention
Gene
ENSGALG00000001040 | MEGF6
Description
multiple EGF-like-domains 6 [Source:HGNC Symbol;Acc:HGNC:3232]
Coordinates
chr21:1026774-1027117:+
Coord C1 exon
chr21:1026774-1026902
Coord A exon
chr21:1026903-1026985
Coord C2 exon
chr21:1026986-1027117
Length
83 bp
Sequences
Splice sites
5' ss Seq
AAGGTTTGG
5' ss Score
5.28
3' ss Seq
GCCCCTGTCCTGTCCCAAAGCAG
3' ss Score
5.91
Exon sequences
Seq C1 exon
GTTGTCCCCCGGGTTTCCATGGGACCGACTGCCAGCAGCACTGCGACTGTGCCCATGGAGCTGCATGTGACCCGGCCACCGGCCACTGCCACTGCCCCGTGGGGCTGCGGGGTCACCGCTGCCAGGAAG
Seq A exon
GTTTGGTGCCCCCCAACCCCCCCCCCCCCACCGTGTCCCAGAGCCGTTTGGCACAGCCGTGGTGCCCCTGTCCTGTCCCAAAG
Seq C2 exon
CAGGCTGCGAGGAGGGGACGTATGGGGAGGGATGCCGGCAGCGCTGTGACTGCGTGGGGAACGCACCCTGTGACCGCATCACGGGGCACTGCCTCTGTCCTCCGGGAAAAACCGGCCCCCGCTGTGACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001040:ENSGALT00000001544:36
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTCCATGGGACCGACTGC
R:
GTTCCCCACGCAGTCACAG
Band lengths:
179-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]