GgaALTA0000431-1/3 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000001045 | SLC4A9
Description
solute carrier family 4, sodium bicarbonate cotransporter, member 9 [Source:HGNC Symbol;Acc:HGNC:11035]
Coordinates
chr13:976973-977502:+
Coord C1 exon
chr13:976973-977060
Coord A exon
NA
Coord C2 exon
chr13:977400-977502
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
3' ss Seq
CCAAGAAGACCTCATTGCAGGGA
3' ss Score
-1.31
Exon sequences
Seq C1 exon
GTTTCTTTTCATTCTACTGGGCCCCCAAGCCAAAGCGAAAGCCTACCATGAGATTGGAAGGGCTATGGCCACGTTGCTGACAGATGAG
Seq A exon
NA
Seq C2 exon
GGATTGATGAGTTTCTGGATGAACTGACTGTGCTTCCTCCTGGAAAATGGGACCCCAGTGACCGAATTCCTCCACCACGCTGCCTGTCGTCCCCAAACAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001045-8-9,8-8,8-7-1/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.135
Domain overlap (PFAM):
C1:
PF075658=Band_3_cyto=FE(12.0=100)
A:
NA
C2:
PF075658=Band_3_cyto=PD(14.9=69.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCATTCTACTGGGCCCCCAA
R:
CACTGGGGTCCCATTTTCCAG
Band lengths:
141-183
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]