GgaALTA0000431-3/3 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000001045 | SLC4A9
Description
solute carrier family 4, sodium bicarbonate cotransporter, member 9 [Source:HGNC Symbol;Acc:HGNC:11035]
Coordinates
chr13:976973-977502:+
Coord C1 exon
chr13:976973-977060
Coord A exon
chr13:977348-977399
Coord C2 exon
chr13:977400-977502
Length
52 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
3' ss Seq
TGTGGCTAATCTCACCACAGCTC
3' ss Score
6.48
Exon sequences
Seq C1 exon
GTTTCTTTTCATTCTACTGGGCCCCCAAGCCAAAGCGAAAGCCTACCATGAGATTGGAAGGGCTATGGCCACGTTGCTGACAGATGAG
Seq A exon
CTCTTCCAAGGGATTGCCCGTCAGGCTAAGCACCAAGAAGACCTCATTGCAG
Seq C2 exon
GGATTGATGAGTTTCTGGATGAACTGACTGTGCTTCCTCCTGGAAAATGGGACCCCAGTGACCGAATTCCTCCACCACGCTGCCTGTCGTCCCCAAACAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001045-8-9,8-8,8-7-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.135
Domain overlap (PFAM):
C1:
PF075658=Band_3_cyto=FE(12.0=100)
A:
NA
C2:
PF075658=Band_3_cyto=PD(14.9=69.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCATTCTACTGGGCCCCCAA
R:
CACTGGGGTCCCATTTTCCAG
Band lengths:
141-193
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]