GgaALTA0000445-1/2 @ galGal3
Alternative 3'ss
Gene
ENSGALG00000001080 | NR5A1
Description
NA
Coordinates
chr17:10162510-10164773:-
Coord C1 exon
chr17:10164655-10164773
Coord A exon
NA
Coord C2 exon
chr17:10162510-10162625
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
ACCCGCCCGTCCCGCAGCAGGGC
3' ss Score
5.04
Exon sequences
Seq C1 exon
GGGCAGCGCTGCCCGGCACTCACGGAGTCTCCTCGAGCTGGAGCTGCTCACCATCGACGCAGAAGAAGCTCTCCTGTGACCTCGGCCCCGTGCACAGCACAGCGCTGAGCCGCATCGAG
Seq A exon
NA
Seq C2 exon
GGCCGCCGGCGGGGATGGACTATTCGTATGATGAGGATCTGGACGAGCTGTGTCCGGTCTGCGGGGACAAGGTCTCCGGGTACCACTACGGGCTGCTCACCTGCGAGAGCTGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001080-0-1,0-0-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAGCTCTCCTGTGACCTCG
R:
ACAGCTCGTCCAGATCCTCAT
Band lengths:
107-110
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]