MmuALTA1015829-1/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000026751 | Nr5a1
Description
nuclear receptor subfamily 5, group A, member 1 [Source:MGI Symbol;Acc:MGI:1346833]
Coordinates
chr2:38710656-38714542:-
Coord C1 exon
chr2:38714357-38714542
Coord A exon
NA
Coord C2 exon
chr2:38710656-38710772
Length
0 bp
Sequences
Splice sites
5' ss Seq
TCAGTAAGT
5' ss Score
9.14
3' ss Seq
ACCCGATCCTCCTTCCACAGGCG
3' ss Score
9.38
Exon sequences
Seq C1 exon
GAGGGGAGGAGGAAAGGACGATCGGACAGGGCCAGTTTCCAGTCCGCCGCTGCCCGCCCGCTGCTGGGTGAAGAAGTTTCTGAGAGCCCGCTAGCCACTGCCCTACCTGAGGCCTGGGAGCCTCCCCACCAGGACCCTGGTGTCCAGTGTCCACCCTTATCCGGCTGAGAATTCTCCTTCCGTTCA
Seq A exon
NA
Seq C2 exon
GCGGACGCCGCGGGCATGGACTATTCGTACGACGAGGACCTGGACGAGCTGTGTCCAGTGTGTGGTGACAAGGTGTCGGGCTACCACTACGGGCTGCTCACGTGCGAGAGCTGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026751-0-3,0-2-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0010513=zf-C4=PU(32.9=67.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGAGGAAAGGACGATCGGA
R:
CTTGCAGCTCTCGCACGTG
Band lengths:
298-528
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types