GgaALTA0000445-2/2 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000001080 | NR5A1
Description
steroidogenic factor 1 [Source:RefSeq peptide;Acc:NP_990408]
Coordinates
chr17:9442589-9444852:-
Coord C1 exon
chr17:9444734-9444852
Coord A exon
chr17:9442705-9442707
Coord C2 exon
chr17:9442589-9442704
Length
3 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
CTGACCCGCCCGTCCCGCAGCAG
3' ss Score
7.96
Exon sequences
Seq C1 exon
GGGCAGCGCTGCCCGGCACTCACGGAGTCTCCTCGAGCTGGAGCTGCTCACCATCGACGCAGAAGAAGCTCTCCTGTGACCTCGGCCCCGTGCACAGCACAGCGCTGAGCCGCATCGAG
Seq A exon
CAG
Seq C2 exon
GGCCGCCGGCGGGGATGGACTATTCGTATGATGAGGATCTGGACGAGCTGTGTCCGGTCTGCGGGGACAAGGTCTCCGGGTACCACTACGGGCTGCTCACCTGCGAGAGCTGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001080-0-2,0-1-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0010513=zf-C4=PU(32.9=67.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAGCTCTCCTGTGACCTCG
R:
ACAGCTCGTCCAGATCCTCAT
Band lengths:
107-110
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]