GgaINT0125998 @ galGal4
Intron Retention
Gene
ENSGALG00000001080 | NR5A1
Description
steroidogenic factor 1 [Source:RefSeq peptide;Acc:NP_990408]
Coordinates
chr17:9442589-9444852:-
Coord C1 exon
chr17:9444734-9444852
Coord A exon
chr17:9442705-9444733
Coord C2 exon
chr17:9442589-9442704
Length
2029 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
ACCCGCCCGTCCCGCAGCAGGGC
3' ss Score
5.04
Exon sequences
Seq C1 exon
GGGCAGCGCTGCCCGGCACTCACGGAGTCTCCTCGAGCTGGAGCTGCTCACCATCGACGCAGAAGAAGCTCTCCTGTGACCTCGGCCCCGTGCACAGCACAGCGCTGAGCCGCATCGAG
Seq A exon
GTGAGTACTTGGCGGTGGGGAGCCCCATGGCTGCCTGGGGGTCAACTGGGTTGCCTGGGGGCCACGCTTCCCATGCTCTGTGGTTTGTGGGGTCTCAGTGACATGGCGGAGGGTGGGGACGCCCAGCAAGGAAGTGGGAGCCATGCACGGGTCTCCGCTTCCCATCTCCGTGAGGAGGGGATGGAGGCACCAGTGCTAGCTGTGCCTGGGGACATGCAGGGACATTCAGGGATGCCATGTGACACCTGGGGATGCCCAGGGATGCCCATCCCTTCTCCAGGCCCTGTGGCAGCAGCAAGAGGCCCTGCCATAATCTCGGCCGTGCTGCGCAGAAGCGCCGGATCCAGCTGACGGGACGAGTGGGCGGTGAGCGGAGGCCTCCGAGGGCTTTGGGAGTGCAGGCGGTGCTGAGCTGTGTGTCGCTGGCCCCAGCTCTGGCACAGCCCCTGCACCTTGGAGCAAGCTTGGGGGTGGCCGGGACCCACACGAACCCCATGGCCCTTCCTGGGCTCCTCTGTCAATGGCTCTGTAGCTCAGAGGCTCCCTGCAGTGTGGGGCTGCTGCTGAGAGGCACCACAGGCAGCAGGAGCGCTCCTTCCCAGCTCAACCACCCCACACAGGGGCTGCTCTGCTGCTATTCTTAGTGTGGGCGCCACGCCGGGTGGCTTTGGAGTGATCCTCTGCTGAGCCCGCTTCCTGTTTGCCGCACATCCCTGCCAACACCGCTTCCTCCCCGGGGCACTGCGGGCCTCATTGGGTGTGCGGGATGAGCCATACGGGGTGAGAAGAGTGGGACAATCTGTGTGGGATGGGATGTGCAGGATGGGATGTGCGGGATGAGATGTGTGGGATGAGCCAAGCCCTGCAGCCAGTGCCCTCTCTGCAGCTCCATCGGGCACCAAGCGCCTTGAATCGCAGTGATGTGCAGGGCAGCAGGGCAGAAGGCCGTCTCGAGCAGAACGGTTTGGCCCTGCAGGGCTCAGCAATGGACCCTTGTTCTCGTGGCCAAGCAGTCTCATGGCAGCCACAGCCCATACAGCTTGGAGCGGGCAGCTCCTCCTGCCTGAGTGGTGCTGTGCCCCTGGGCACCATCCTGGTGCAGAACACAGAGCTGGCACTGCCCCCTGCCTCAGTCCCGGCTGTATTTTGGGCTGGATTTGGCCCTGGCCCATCGGCTGATAGGGCAGGGAGCCGAGCTGGCTGTGTTCACCTGTGAGCAGGAAACTTCCATGCAGGACAAATGCAGATGATGAATAGAATGTGCTTCTGCACTGATCTGCCAGGGAATGTTTCATTAAGAGTCCCTAAAAATGAAGCAATTAATTAAACAGCGGCACTGAACATGCCACAGGGCAGCGCTGGCAGCATTGCCGTGTGTGCTGGCGGCCGGCCAACACCAAAGCCGGTGCCGTTCCCGACGGCCGCAGGGGAGGTGCAGAAGGCCGTGCACCCCCCGCTCCTCACGCCGGGCTCTCAGCAGCTCCCCGCTATCGCCTGCGGTGGAGGCAAAGGGGTTGGTCCGGGCTGCGCTGGGGGTGGCGGGGCTCCGGTTAGGGCTGGGGGTTAGAGTTGGGGTTAGGGTTAGAATTGGGGTAAAGGACGTGGTGGATGCTGCAGGCAGCGTGTTGCGCTTGGGTGACACAGCAGCCTCCAGTCCCTTCTTCTGACGATTCCTGAGGAGGTACCCTCAGCCCGGGGCTCCCTCAGCCCACGACCGCCCCCGGCCGCAGCCCCCGGCGGCGTCCCGCTCCCCTCCCGCCCTGCCCTCGGGCTGCCGGGTCCCTGCAGGTCCCTCCTCCCCAGCCCGGCCCCAGCCGCCCGCCGCCCGCTCTCCCAGAGGAGGTTTCCCATCCCCCGGGGGGCTGTCCGCCCGCCCGCACCCGCATGGAGATGCTCTTCCAGGCGCTATAAAGGGCTCTGGCTCCGGCACCTGCGCTCGGGCTTCGCCGCGCCGCTCTCCCGCTCCGCACCCGGCGCAGGGCTCGGGGCCGCCCGGTGCCGCCCCGCTGACCCGCCCGTCCCGCAGCAG
Seq C2 exon
GGCCGCCGGCGGGGATGGACTATTCGTATGATGAGGATCTGGACGAGCTGTGTCCGGTCTGCGGGGACAAGGTCTCCGGGTACCACTACGGGCTGCTCACCTGCGAGAGCTGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001080:ENSGALT00000001616:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0010513=zf-C4=PU(32.9=67.6)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]