HsaINT0115667 @ hg38
Intron Retention
Gene
ENSG00000136931 | NR5A1
Description
nuclear receptor subfamily 5 group A member 1 [Source:HGNC Symbol;Acc:HGNC:7983]
Coordinates
chr9:124503294-124507430:-
Coord C1 exon
chr9:124507249-124507430
Coord A exon
chr9:124503411-124507248
Coord C2 exon
chr9:124503294-124503410
Length
3838 bp
Sequences
Splice sites
5' ss Seq
TTCGTAAGT
5' ss Score
9.77
3' ss Seq
GACCCGCTGTCCCTCCGCAGGCG
3' ss Score
11.41
Exon sequences
Seq C1 exon
GGGAGGAGGAGGAGGACGGACGGACAGGGCCAGCCTGCTGTCCGGCTGCCGCCCGCCGTGGTGTGAGGGGGTTTCTGCGCACCCACAGTCGCCACCGTCCCACCTGGGCTGCCGGAGCCTCCCCCTGGACCCCTGGTGCCCACTGCCACCCTCATCCGGTGTGAGAGCGCTGCTTCCGCTTC
Seq A exon
GTAAGTGAGGGCCTTGGCCCAGGCCTCTAATGGCCAGCCTCCTTCTGCAGTGCCTCCCTGCAGCCTGGGCCGGCCACTGCCTGCTCCACTTAGTGACCGGTGCCCCCTGCTCTGGGCAGGGAAGGTGCCAGGGGTCTCCCAGACTCACCCTCCCACCATGCTACCCCCTCTTCTTCCCTGGGCTGCCGATGGGAGGAGCCAGGCCTGTGACCACAAGCCCCATGGAGGTCCGCTGGTGTCCCGCTGTCTCTGGCCAGGCATCCACCAGGCTGTGTGGGTCTGAGCCTAGAGGTCTGTGAGTGTGTCTGGAGGGCTCTGGGCCTGTCTTGGGGCTCTGTCCCCCACCTGAGTTTCTGTGTTGTCTCTGTGGCTCTCTCTGAGTCTTGCTGTGTATCCGTGTGTCTGTCTCCGGCATCCATCTGTCAGCCTGGGTTCTGCGGCCGGGCCAGGTCTAGGCTTCCCTCCCTGGGTGGGTGGATGAGGGGCTGGAACTCCCCAGGCGGTGGGCTGGAACCTGGAACCTGTGGGGGTGGGTGCCTCGGAGCCTGGAGTGCAGAGGAGCCATGGGCTTCCAGCCGGTGAGAGTAGAAACCCTTGGGGAGAGGGGATTGGAGATAGAGGGAGAAGGGCCTGAGCCCAGCCCCCACCCAACCCCGGCGGCTGGGGCCTGTGTGTCCAGCTCCAGGTTTCCAGGAGACCTCGGGTGAGCTCTACCTTAGAACAGCCAACTGGGGCACCCCAGCCCATCATCCACCAACCCCCTTCCCTCCTGCAGTCACTGTCTGAGGGCTCCATTGTGGTGGGGAGCTGTTCAGAGGCGGCAGTGACCCCCACCTCCAGCTCGGGCAGATGCTCTTGTTTCTCAGGGGTTTGGGGGTGCGGGGGGTACGATTAACAGGGTCTCTGGCTCTTTCTTCCCTCCTCATCCAAGATTCTTGCATGGAAACCGCAGTACCCCATCTGTAAAGCCAACATGTTCCACTTTATGCTCGGAGAAAACTGAGGCTCTCGTTTCAGAGAGGAGAAGTGACTTGCCCGAGCTTGCACAGCTAGTCTGCGGGTTCTGCTCCTTCTGTGGGTGAGCCAGCTGAGTGCGGTCTGCGCGGGGGGTTCTCTGGCCACAACTTGCAGGCCCCAGGCCCAGCTCCAACCGAAGCCCGAGGCCTCCAGGCGGGCGGGAGCCCAGATGGAGCCTTTTGGTGGGTTGCGCCGCTGTCAATGCAAAATTGCGGTATTTTCCTGCTTGAAGATCGCAGCTTTTTGGCCTCATGGTCCCCAAACTCTCTCTGACCCCAGGTGCCAGCGGGGGCGGAGGCAGGATGCAAGCAGGCCCCTTCCTTTCGGGTCCGTTTCTCCAGCTGAAAAACAGTGGCCCCGCGGATGGTCCCTAGCCCAGAGCAACTGCTTGGCCCATAGGCCCGGGAACCCCTTTGTCCCCAAGACCGCCCAGCGCTTTCTTCCTCGCCCCACCCCCCCGTGAGAGCTCCGAGGGGAGCAGCGGGGCCCTGCCTCCGGGCTCCTCTCCCAGCTCCTGCGCCCGTAGAGGCTTCGGGTCCCCCCAGGCCTCGGACATTTGTAAAATGGGATTTCCACGAGTCCCATTTCCAGCCCAGCGACCTGAGGCTAGCGAGCAGAAGGGGTTCGCCCCAGATCTCCCCAGAGGGGCGCCACTGAGCGCTTCCGCCAGGCCACACGCGTGCTTTGCCCCTACTGCTTGGGTTCATCCTCACGACCCACCCTTAGCGAGGAAGAGCGGTCATCTACCCACTTCACAGATGCGGCAACTGAAGACCCGAGACGGGGAGAGAGCTGCTACAGGCTCGAGTGAGGAGATGTGGTGGGCCCCATGGGAGAATCTGGCTTCCACCCGTGAATCCGAGCCTCGGCCACGGTCGCCACTCGCCCTTACCCACTTCCACGCTGTAGTGCGACCAGCCACCCGCGTGGCATTCGCCACGACCCAGCTGGGTTCACAGACAGGAGCTGCCTCCTCCCACTGCAGGCGGGTGACCCAAGGCCCCCACTGCCCTATACCTGCCCAGATCGCGGGGCACTCGGGCTCCGCAGCTCTCTGGCCGCGCTCGGGGTCCGGGGAGCCGGGCTGCGGCTGGGGGGCCTGGAGGATGAGGGCGAAGACTCGAGCTGGACTGCGGAGAGGGTGCCGGCGCGGGCCGGGCTTGGGGGGAGGACACGACCGGGCCTCCGCCCCCGGATACCGCACGCGCCGATATAGAGGGGCCGGCCCCCGGCCCCGGCGCGGCGGGTTGGCGCAGGGCGGGGTGGCGGCTGAGGGGCCCGGGTCCCAGGTGCGCCTCGGAGCGGCCCCGGCGGCGGTGCGGGGGGGAACAGGGAGGCAGGATGGGGGGCGGGGAGGCGGGAGGGGGGAGCCGAGGCCCCCGCGCCGCCAGCCCCGCGCCCCCGCCTCCCCGTCCCCGGCCCGAGCGGCCGTCATCGCGGGCGGGCGGCGCTGCGCCCGGGTGCGGCTCCTCGCCGGCGGCGGCGGCGCGGCCGAGAGGTGCGGGCTCCGCGCGGGCGGGACGCGGGGCGCTGCTCGCAGGAGCGACCAGGTGGGCGCCGGGCCGACCGCAGCCGCCGTCGCGCCCCCTCTCGCGTCCCGGGCCCTGGCTCTTCGCGCTTCCCTCCTCCGGACTTCGCCTCTCCGCCCGAGGTCGCTCCCTCGCCTCGGGCTCGGCTTCCCGGAGCCCGCCGACCCCCGCCCGAGGTCTCCCCGCCCGACGTCCCGGTGGCAGCGGCGGCTCGGGCTGCGCCTCCCGTTGCCGTCGCTGCTGCGGCTTTGTCTCCCCCGGGGAGGGGGTCCCGGCGGCTCTGCGTTTTCGGGCTCTCGGTCCCGGCGCCGTCGTTTTCCGCCTCCTGCGGCCCGGGCCCCCGTCTGGGTCCGACCCTGCGGGGCCTCGCCTTGGCGCTTGGGCTCCTGCCCGGCAGGTTTCCGCGCGTCCCCTGTCCCCGACCCTCGGGCTGGGCGCTTCCGCCTCCAGGTTTTCTCTCCGTGTTTCTGTAGCTCCCCGGCCTCGTCTCTCCGGGGCTCCTCTCGTCTCGGCGTCTCTGTCTGTCGTCTATCGTTGTGTCTCTGGCTCTGCGTCAGTCTCTCTTGGGTTTTCTCTTCGGGCCTCCGCTGTCTCTCCGAGTCTCTGATCCAATCCCCCACCCCTCGTTTCTCTCTCTCTCTCTCTCTCTCGTCTCTCTCTCTCTCTCTCTCTCTCTCTGTCTCCCTGTCTCTCTCCATCCCTCCCTGTGTCTCGTCCCCGCCGGGTTCTCTCTAGCTGGGCGTCTCAGTGTCTGTGTCTCTGGCACTCTCGGACTGGCCTCGTGTCTGCGCCCGGTGGCGTCGGTCGTTGTCTCTCGCCAGAGTTTCTTCCCATCTCTGGCTCCCCCGGACTCTGTCTCTGCCTCCTTCGTCTCTGTCGGGTTCCCAGAACACCCGGGCCGGGCGCCCCAGCGCTCCTGGGTCCCCTGGCGTCTTCCCCGCGGCTGAGCCCATCTCTTTTTCTCAGAATCGGGGTTTTGTTCTCAGACAAACGAATCCCAATCGAAGCGCATCGAACCCGAGGGCCCCAGATCGGGCGCGACGGGGTCCGCGCGGGAGGAGCCCCCCGGACGGGGCGGGAGCGTGGGGCCTGGCAGGGGAAGGCCGGGCGCGGGGACTGCACCGGACCCACCCCGGGACGCTGCGCGGGGCGCTCGGTGGGTGCCGGCGGCAGCGCCTGGGCACAGAGAGGGGATTACGCGACGGGCCGGCGACAGCGGCTGGGGCGGCGGCCGCGGGGACCCCAGGCTGCCGGTCTCCGCCGGCCCTCCCTGACCCGCTGTCCCTCCGCAG
Seq C2 exon
GCGGACGCCGCGGGCATGGACTATTCGTACGACGAGGACCTGGACGAGCTGTGCCCCGTGTGCGGGGACAAGGTGTCCGGCTACCACTACGGACTGCTCACGTGTGAGAGCTGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136931:ENST00000373588:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0010513=zf-C4=PU(32.9=67.6)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development