GgaALTA0000617-1/2 @ galGal3
Alternative 3'ss
Gene
ENSGALG00000001419 | DAB2IP
Description
NA
Coordinates
chr17:9308534-9311858:+
Coord C1 exon
chr17:9308534-9308686
Coord A exon
NA
Coord C2 exon
chr17:9311665-9311858
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
3' ss Seq
GCGTGCTGTAGTACCAGCAGGAC
3' ss Score
-0.86
Exon sequences
Seq C1 exon
GCCCCTTCTCCTGTGAACCCCAATGCCCTGGACCGCACTGCTGCTTGGCTTTTGAATATGAACATGCAATTTTTAGAAGATGAAAGCATTGACCCAGATTCCAAGCACAGGGATAAGCTCAGGAATAAGGACGAGCTCAGCCAAGCAGAAAAG
Seq A exon
NA
Seq C2 exon
GACCTGGTGGTGCTGCAGGACAAGTTGCGCATCTCCAACAAGAAGCTGGAGGAGTATGAGACACGCTTCAAGTGCCAGGAGGAGACAACGCAGAAACTGATGCTGGAGTACCAGGCCAGGCTGGAGGAGAGCGAGGAGCGGCTGCGGAGACAGCAGGAGGATAAGGAGATCCAGATGAAGGGCATCATCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001419-20-23,20-22-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.882 A=NA C2=0.385
Domain overlap (PFAM):
C1:
PF120043=DUF3498=FE(9.8=100)
A:
NA
C2:
PF120043=DUF3498=FE(12.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCCAGATTCCAAGCACAGG
R:
TGTTGGAGATGCGCAACTTGT
Band lengths:
103-112
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]