GgaEX0001618 @ galGal3
Exon Skipping
Gene
ENSGALG00000001419 | DAB2IP
Description
NA
Coordinates
chr17:9306223-9311858:+
Coord C1 exon
chr17:9306223-9306279
Coord A exon
chr17:9308534-9308686
Coord C2 exon
chr17:9311656-9311858
Length
153 bp
Sequences
Splice sites
3' ss Seq
GGTTGTATGTTTCATTGTAGGCC
3' ss Score
7.7
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
Exon sequences
Seq C1 exon
TCCTCCTCCTCCAAGGGTGACAGCCCCGAGATGAAGCAGCGCACCATGCACAAACAG
Seq A exon
GCCCCTTCTCCTGTGAACCCCAATGCCCTGGACCGCACTGCTGCTTGGCTTTTGAATATGAACATGCAATTTTTAGAAGATGAAAGCATTGACCCAGATTCCAAGCACAGGGATAAGCTCAGGAATAAGGACGAGCTCAGCCAAGCAGAAAAG
Seq C2 exon
TACCAGCAGGACCTGGTGGTGCTGCAGGACAAGTTGCGCATCTCCAACAAGAAGCTGGAGGAGTATGAGACACGCTTCAAGTGCCAGGAGGAGACAACGCAGAAACTGATGCTGGAGTACCAGGCCAGGCTGGAGGAGAGCGAGGAGCGGCTGCGGAGACAGCAGGAGGATAAGGAGATCCAGATGAAGGGCATCATCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001419_MULTIEX1-8/11=7-9
Average complexity
S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.956 A=0.882 C2=0.385
Domain overlap (PFAM):
C1:
PF120043=DUF3498=FE(57.3=100)
A:
PF120043=DUF3498=FE(9.8=100)
C2:
PF120043=DUF3498=FE(12.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCTCCTCCAAGGGTGACAG
R:
TGCCCTTCATCTGGATCTCCT
Band lengths:
248-401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]