BtaEX0010655 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008232 | DAB2IP
Description
Bos taurus DAB2 interacting protein (DAB2IP), mRNA. [Source:RefSeq mRNA;Acc:NM_001144082]
Coordinates
chr11:92654264-92658222:+
Coord C1 exon
chr11:92654264-92655167
Coord A exon
chr11:92655823-92655975
Coord C2 exon
chr11:92658029-92658222
Length
153 bp
Sequences
Splice sites
3' ss Seq
ACAGCTGTGTTTCATCGCAGGGC
3' ss Score
8.17
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
Exon sequences
Seq C1 exon
TCCAGAATCCCGTGTACCAGATGGCGGCTGGCCTGCCGCTGTCTCCCCGCGGCCTCGGCGACTCGGGCTCTGAGGGCCACAGCTCCCTGAGCTCCCACAGCAACAGTGAAGAGCTGGCAGCTGCCACCAAGCTGGGCAGCTTCAGCAGCAGCACTGCCGCCGCCGCCCCCGAAGACCTGGGCCGGCGCCCTGGGGAGCTGGCACGGCGGCAGGTGTCGCTGACCGAGAAGGGTGGGCAGCCTACAGTGCCACGGCAGAACAGCGCCGGCCCCCAGCGGAGGATCGACCAGCCGCCGCCGCCACCCCCGCCGCCGCCCCCTGCGCCCCGCGGCCGGACGCCACCCACCCTGCTGAGCACCCTGCAGTACCCACGGCCGTCGAGCGGGACGCTGGCCTCAGCCTCGCCCGACTGGGCTGGGCCCGGAGCCCGGCTGCGGCAACAGTCCTCATCCTCCAAGGGCGACAGCCCCGAGCTGAAGCCTCGCGCCGTGCACAAGCAG
Seq A exon
GGCCCTTCACCCGTGAGCCCCAATGCCCTGGACCGCACGGCTGCCTGGCTCTTGACCATGAATGCGCAGTTGTTAGAAGACGAGGGCCTGGGCCCAGACCCCCCGCACAGGGATAGGCTAAGGAGTAAGGAGGAACTCAGCCAAGCGGAAAAG
Seq C2 exon
GACCTGGCAGTGCTGCAGGACAAGTTGCGAATCTCCACCAAGAAGCTGGAGGAGTATGAGACCCTGTTCAAGTGCCAGGAGGAGACAACCCAGAAGCTAGTGCTGGAGTACCAGGCACGGCTAGAGGAGGGCGAGGAGCGGCTGCGACGGCAGCAAGAGGACAAGGACATCCAGATGAAGGGCATCATCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008232_MULTIEX1-1/3=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.914 A=0.941 C2=0.231
Domain overlap (PFAM):
C1:
PF120043=DUF3498=FE(58.0=100)
A:
PF120043=DUF3498=FE(9.6=100)
C2:
PF120043=DUF3498=FE(12.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGTCCTCATCCTCCAAGGG
R:
TGCCCTTCATCTGGATGTCCT
Band lengths:
245-398
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development