MmuEX0013711 @ mm10
Exon Skipping
Gene
ENSMUSG00000026883 | Dab2ip
Description
disabled 2 interacting protein [Source:MGI Symbol;Acc:MGI:1916851]
Coordinates
chr2:35719853-35723222:+
Coord C1 exon
chr2:35719853-35720741
Coord A exon
chr2:35721261-35721413
Coord C2 exon
chr2:35723029-35723222
Length
153 bp
Sequences
Splice sites
3' ss Seq
ACAGCTGTGTTTCATCGTAGGGC
3' ss Score
7.9
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
Exon sequences
Seq C1 exon
TGGCCCCACTTTCCTTCCAGAATCCTGTGTACCAGATGGCGGCCGGCCTGCCACTGTCACCCCGTGGCCTTGGTGACTCAGGCTCTGAAGGCCACAGCTCCCTGAGCTCTCACAGCAACAGTGAAGAGCTGGCAGCCGCTGCCAAACTAGGAAGTTTCAGCACTGCTGCAGAGGAGCTGGCAAGGCGGCCTGGAGAACTGGCACGGAGGCAGATGTCACTGACTGAGAAGGGTGGGCAGCCCACAGTGCCGAGGCAAAATAGTGCCGGTCCCCAGCGGAGGATTGACCAGCCGCCACCGCCACCACCACCACCGCCTCCTGCTCCCCGGGGCAGGACACCTCCTACCCTGCTGAGCACCCTACAGTACCCACGACCCTCAAGTGGAACCCTGGCATCAGCATCCCCCGACTGGGCTGGCCCTGGCACCCGGCTGCGGCAACAGTCCTCCTCCTCCAAGGGAGACAGCCCAGAGCTGAAGCCCCGAGCCATGCACAAGCAG
Seq A exon
GGCCCTTCACCCGTCAGTCCCAATGCCCTGGACCGCACGGCCGCTTGGCTCTTGACCATGAACGCGCAGTTGTTAGAAGACGAGGGTCTGGGCCCAGATCCCCCCCACAGGGATAGGCTAAGGAGTAAGGAGGAACTCAGCCAAGCAGAAAAG
Seq C2 exon
GATCTGGCAGTGCTACAAGACAAGCTACGGATCTCCACCAAGAAGCTGGAGGAGTATGAGACCCTATTCAAGTGCCAGGAGGAGACGACGCAGAAGCTGGTGCTGGAGTATCAGGCTCGGCTGGAAGAAGGTGAGGAGCGGCTGCGGCGGCAGCAGGAAGACAAGGATATCCAGATGAAAGGCATCATCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026883_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.914 A=0.941 C2=0.299
Domain overlap (PFAM):
C1:
PF120043=DUF3498=FE(85.5=100),PF120043=DUF3498=PU(2.4=1.0)
A:
PF120043=DUF3498=FE(10.8=100)
C2:
PF120043=DUF3498=PD(0.3=1.5),PF120043=DUF3498=FE(52.0=100)
Other Inclusion Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCAAGTGGAACCCTGGCATC
R:
TTCTTCCAGCCGAGCCTGATA
Band lengths:
253-406
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types