DreEX6048573 @ danRer10
Exon Skipping
Gene
ENSDARG00000069484 | dab2ipa
Description
DAB2 interacting protein a [Source:ZFIN;Acc:ZDB-GENE-081104-516]
Coordinates
chr8:12098612-12112847:-
Coord C1 exon
chr8:12111956-12112847
Coord A exon
chr8:12104349-12104501
Coord C2 exon
chr8:12098612-12098814
Length
153 bp
Sequences
Splice sites
3' ss Seq
TTCAAATGAACTTTTATTAGGCT
3' ss Score
3.92
5' ss Seq
AAGGTAATA
5' ss Score
8.49
Exon sequences
Seq C1 exon
CCTTCCAGAACCCTGTGTACCAGATGGCCGCCGGATTGCCTGTGTCACCCCGTGCAGTGGCCGATTCAGGATCTGAATGCCAGAGTTCCATCAGCAGCAATGCAGAGGAAGCAGCTACCGCGGGGCCAAAGCACCCGTTTATAAGCCAGTCCAGCACAGGGGCGAGCGGCGGAGGGGGCAGTAGTGGGGATGAATTTATTCAACGTCCTGGAGAGTTTACACGTCGACAGCTGTCACTTACAGAGACCCAACACCAGACCAATGTACCGCGGCAGAACAGTGCTGGCCCGCAGCGCCGGATAGACCAACCACCTCCAGCCATTACAAGAGGCCGCACTCCACCAAACATGCTCAACACTGCTCCCTATCCACGGCCCTCCAGTGGAAGTATGATGTCATCGTCTCCTGACTGGCCCAGCAGCGGCACTAGACTGAGGCAACAGTCTTCGTCCTCCAAAGGGGACAGTCCAGAGTCCAAGCAGCGCACACTACACAAACAA
Seq A exon
GCTCCATCTCCTGTGAATCCCAATGCATTGGACCGCACAGCTGCTTGGCTGCTGAATATGAATGTGCAATATTTGGAGCAGGAGGGAATTGACCCAGATTCCAAACACCGGGAGGACTTCCCAAACAAGGAGGATCTCACACCCACTGAAAAG
Seq C2 exon
TATCAGCATGAGATAGCCGTCCTGCAGGAGAAGCTGCGTATTTCTGCCAAGAAGCTGGAGGAGTATGAATCTCGTATGAAGAGTCAAGACGACCAAACGCAGAAGATGCTCCTGGAGTACCAGGCCCGGCTGGAGGACACGGAGGAGAGACTACGCAAACAGCAGGACGACAAAGAGCTGCAAATGAAGAGCATCATCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000069484-'15-17,'15-15,16-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.966 A=0.903 C2=0.738
Domain overlap (PFAM):
C1:
PF120043=DUF3498=FE(57.3=100)
A:
PF120043=DUF3498=FE(9.7=100)
C2:
PF120043=DUF3498=FE(12.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAGGCAACAGTCTTCGTCC
R:
TTGCAGCTCTTTGTCGTCCTG
Band lengths:
252-405
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]