GgaEX0001618 @ galGal4
Exon Skipping
Gene
ENSGALG00000001419 | DAB2IP
Description
DAB2 interacting protein [Source:HGNC Symbol;Acc:HGNC:17294]
Coordinates
chr17:8599408-8605843:+
Coord C1 exon
chr17:8599408-8600284
Coord A exon
chr17:8602539-8602691
Coord C2 exon
chr17:8605661-8605843
Length
153 bp
Sequences
Splice sites
3' ss Seq
GGTTGTATGTTTCATTGTAGGCC
3' ss Score
7.7
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
Exon sequences
Seq C1 exon
AGCTGCTGGCCCCGCTCTCCTTCCAGAACCCCGTGTACCAAATGGCCGCCGGGCTGCCGCTCTCACCCCGCGGCCTGGGCGACTCCGGCTCCGAGTGCCACAGCTCGCTCAGCTCCCACAGCAACAGCGAGGAGCTGACGGCCAACAAACACGGCTTCGCCGGCCCCGCCGCCAGCGAGGACTTCACCCGCCGGACGGGGGAACTGGCCCGGCGGCAGCTCTCGCTTTCAGAGAAGGGCGGGCAGCCCACCATGCCGCGGCAGAACAGCGCCGGACCGCAGCGGCGGATAGACCAGCCACCCCCGCCACCGCCACCGCCCGTCACCCGGGGCAGGACGCCGCCCTCGCTGCTGAACACGGTGCAGTACCAGCGGCCTTCCAGTGGCAGCATGATGTCCTCCTCGCCCGACTGGCCCGGCAGCGGGGCCCGTCTCCGGCAGCAGTCCTCCTCCTCCAAGGGTGACAGCCCCGAGATGAAGCAGCGCACCATGCACAAACAG
Seq A exon
GCCCCTTCTCCTGTGAACCCCAATGCCCTGGACCGCACTGCTGCTTGGCTTTTGAATATGAACATGCAATTTTTAGAAGATGAAAGCATTGACCCAGATTCCAAGCACAGGGATAAGCTCAGGAATAAGGACGAGCTCAGCCAAGCAGAAAAG
Seq C2 exon
TACCAGCAGGACCTGGTGGTGCTGCAGGACAAGTTGCGCATCTCCAACAAGAAGCTGGAGGAGTATGAGACACGCTTCAAGTGCCAGGAGGAGACAACGCAGAAACTGATGCTGGAGTACCAGGCCAGGCTGGAGGAGAGCGAGGAGCGGCTGCGGAGACAGCAGGAGGATAAGGAGATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001419_MULTIEX1-8/14=7-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.956 A=0.882 C2=NA
Domain overlap (PFAM):
C1:
PF120043=DUF3498=FE(57.3=100)
A:
PF120043=DUF3498=FE(9.8=100)
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCCAGTGGCAGCATGATGT
R:
CTCCAGCATCAGTTTCTGCGT
Band lengths:
242-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]