GgaALTA0000617-1/3 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000001419 | DAB2IP
Description
DAB2 interacting protein [Source:HGNC Symbol;Acc:HGNC:17294]
Coordinates
chr17:8602539-8605863:+
Coord C1 exon
chr17:8602539-8602691
Coord A exon
NA
Coord C2 exon
chr17:8605670-8605863
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
3' ss Seq
GCGTGCTGTAGTACCAGCAGGAC
3' ss Score
-0.86
Exon sequences
Seq C1 exon
GCCCCTTCTCCTGTGAACCCCAATGCCCTGGACCGCACTGCTGCTTGGCTTTTGAATATGAACATGCAATTTTTAGAAGATGAAAGCATTGACCCAGATTCCAAGCACAGGGATAAGCTCAGGAATAAGGACGAGCTCAGCCAAGCAGAAAAG
Seq A exon
NA
Seq C2 exon
GACCTGGTGGTGCTGCAGGACAAGTTGCGCATCTCCAACAAGAAGCTGGAGGAGTATGAGACACGCTTCAAGTGCCAGGAGGAGACAACGCAGAAACTGATGCTGGAGTACCAGGCCAGGCTGGAGGAGAGCGAGGAGCGGCTGCGGAGACAGCAGGAGGATAAGGAGATCCAGATGAAGGGCATCATCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001419-41-33,41-32,41-31-1/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.882 A=NA C2=0.385
Domain overlap (PFAM):
C1:
PF120043=DUF3498=FE(9.8=100)
A:
NA
C2:
PF120043=DUF3498=FE(12.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCCAGATTCCAAGCACAGG
R:
TGTTGGAGATGCGCAACTTGT
Band lengths:
103-112
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]