GgaALTA0000617-2/3 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000001419 | DAB2IP
Description
DAB2 interacting protein [Source:HGNC Symbol;Acc:HGNC:17294]
Coordinates
chr17:8602539-8605863:+
Coord C1 exon
chr17:8602539-8602691
Coord A exon
chr17:8605661-8605669
Coord C2 exon
chr17:8605670-8605863
Length
9 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
3' ss Seq
TCTGTCCCCGCGTGCTGTAGTAC
3' ss Score
4.94
Exon sequences
Seq C1 exon
GCCCCTTCTCCTGTGAACCCCAATGCCCTGGACCGCACTGCTGCTTGGCTTTTGAATATGAACATGCAATTTTTAGAAGATGAAAGCATTGACCCAGATTCCAAGCACAGGGATAAGCTCAGGAATAAGGACGAGCTCAGCCAAGCAGAAAAG
Seq A exon
TACCAGCAG
Seq C2 exon
GACCTGGTGGTGCTGCAGGACAAGTTGCGCATCTCCAACAAGAAGCTGGAGGAGTATGAGACACGCTTCAAGTGCCAGGAGGAGACAACGCAGAAACTGATGCTGGAGTACCAGGCCAGGCTGGAGGAGAGCGAGGAGCGGCTGCGGAGACAGCAGGAGGATAAGGAGATCCAGATGAAGGGCATCATCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001419-41-33,41-32,41-31-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.882 A=NA C2=0.385
Domain overlap (PFAM):
C1:
PF120043=DUF3498=FE(9.8=100)
A:
NA
C2:
PF120043=DUF3498=FE(12.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCCAGATTCCAAGCACAGG
R:
TGTTGGAGATGCGCAACTTGT
Band lengths:
103-112
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]