HsaALTA1028134-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000136848 | DAB2IP
Description
DAB2 interacting protein [Source:HGNC Symbol;Acc:HGNC:17294]
Coordinates
chr9:121774260-121776391:+
Coord C1 exon
chr9:121774260-121774412
Coord A exon
chr9:121776198-121776215
Coord C2 exon
chr9:121776216-121776391
Length
18 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
3' ss Seq
GGACGCTGCCCTCCTGGTAGGAC
3' ss Score
5.58
Exon sequences
Seq C1 exon
GGCCCTTCACCTGTGAGCCCCAATGCCCTGGACCGCACAGCCGCTTGGCTCTTGACCATGAACGCGCAGTTGTTAGAAGACGAGGGCCTGGGCCCAGACCCCCCCCACAGGGATAGGCTAAGGAGTAAGGACGAGCTCAGCCAAGCAGAAAAG
Seq A exon
GACCTGGCGGTGCTGCAG
Seq C2 exon
GACAAGCTGCGAATCTCCACCAAGAAGCTGGAGGAGTATGAGACCCTGTTCAAGTGCCAGGAGGAGACGACGCAGAAGCTGGTGCTGGAGTACCAGGCACGGCTGGAGGAGGGCGAGGAGCGGCTGCGGCGGCAGCAGGAGGACAAGGACATCCAGATGAAGGGCATCATCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136848-55-44,55-43-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.947 A=NA C2=0.229
Domain overlap (PFAM):
C1:
PF120043=DUF3498=FE(9.7=100)
A:
NA
C2:
PF120043=DUF3498=FE(12.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCGCAGTTGTTAGAAGACGA
R:
CTTGGTGGAGATTCGCAGCTT
Band lengths:
115-133
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains