MmuALTA1016098-1/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000026883 | Dab2ip
Description
disabled 2 interacting protein [Source:MGI Symbol;Acc:MGI:1916851]
Coordinates
chr2:35721261-35723158:+
Coord C1 exon
chr2:35721261-35721413
Coord A exon
NA
Coord C2 exon
chr2:35723029-35723158
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
3' ss Seq
GCTCGTTGCCCTGCTGGCAGGAT
3' ss Score
4.99
Exon sequences
Seq C1 exon
GGCCCTTCACCCGTCAGTCCCAATGCCCTGGACCGCACGGCCGCTTGGCTCTTGACCATGAACGCGCAGTTGTTAGAAGACGAGGGTCTGGGCCCAGATCCCCCCCACAGGGATAGGCTAAGGAGTAAGGAGGAACTCAGCCAAGCAGAAAAG
Seq A exon
NA
Seq C2 exon
GATCTGGCAGTGCTACAAGACAAGCTACGGATCTCCACCAAGAAGCTGGAGGAGTATGAGACCCTATTCAAGTGCCAGGAGGAGACGACGCAGAAGCTGGTGCTGGAGTATCAGGCTCGGCTGGAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026883-43-39,43-38-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.941 A=NA C2=0.299
Domain overlap (PFAM):
C1:
PF120043=DUF3498=FE(10.8=100)
A:
NA
C2:
PF120043=DUF3498=PD(0.3=1.5),PF120043=DUF3498=FE(52.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCACCCGTCAGTCCCAATG
R:
AGCTTGTCTTGTAGCACTGCC
Band lengths:
175-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types