GgaINT0124835 @ galGal4
Intron Retention
Gene
ENSGALG00000001419 | DAB2IP
Description
DAB2 interacting protein [Source:HGNC Symbol;Acc:HGNC:17294]
Coordinates
chr17:8599408-8602691:+
Coord C1 exon
chr17:8599408-8600284
Coord A exon
chr17:8600285-8602538
Coord C2 exon
chr17:8602539-8602691
Length
2254 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
GGTTGTATGTTTCATTGTAGGCC
3' ss Score
7.7
Exon sequences
Seq C1 exon
TCTGATAGATTTCACACGGTTACCATCTCCAACCCCCGAAAACAAGGACTTGTTTTTTGTCACAAGGTCTGCCGGGGCCCAGCCCTCGCCTGCTCGGAGCTCCAGTTACTCAGAGGCCAATGAGCCCGACGTGCAGATGTCAAATGGCAGCAAGAGTTTGTCCATGGTGGACTTGCAGGACAATCGGCTCTTGGACAGCGGGGCCAACGCGCCCGGCGCTGCCGACTCCCTCAATGACAGTCAGTCGTCCCTCGGGCAGTTGCAGGGTGTGTGGACCGCTCGGACTCAGCAGAACAGCGTGACGGGGATGGCCACGGTGCGCCGCGTGGGTCAGACGCCCACCACGCCGAGCGGTGAGAGCGCACCCGGCCGGCCCCAGCTGCTGGCCCCGCTCTCCTTCCAGAACCCCGTGTACCAAATGGCCGCCGGGCTGCCGCTCTCACCCCGCGGCCTGGGCGACTCCGGCTCCGAGTGCCACAGCTCGCTCAGCTCCCACAGCAACAGCGAGGAGCTGACGGCCAACAAACACGGCTTCGCCGGCCCCGCCGCCAGCGAGGACTTCACCCGCCGGACGGGGGAACTGGCCCGGCGGCAGCTCTCGCTTTCAGAGAAGGGCGGGCAGCCCACCATGCCGCGGCAGAACAGCGCCGGACCGCAGCGGCGGATAGACCAGCCACCCCCGCCACCGCCACCGCCCGTCACCCGGGGCAGGACGCCGCCCTCGCTGCTGAACACGGTGCAGTACCAGCGGCCTTCCAGTGGCAGCATGATGTCCTCCTCGCCCGACTGGCCCGGCAGCGGGGCCCGTCTCCGGCAGCAGTCCTCCTCCTCCAAGGGTGACAGCCCCGAGATGAAGCAGCGCACCATGCACAAACAG
Seq A exon
GTGAGCGGGGGGCTGAAGCGGCTGGGGGGCGAATGGGCCAGGCTGTGGGCTTGGAGGAGAAATGGGGTGGGGGGATTGCTGCAGTGGGAGCGGGCTTCGTGGCAGCGTGGTGATTGTAGCACGGTTCCTGCACCCTGCCTGGCCTGAGCCAGAGGCCCTCTGAGGAATGGGACACAGACGAGTGCTCATCCTCCGTTCCTTTGCCGTGCGGCGCGATGGAGCGTGCTGGATGCAGGGCGGTGGGTGGCAGAGCCACCAGGGCAGTGGCAGCCCCGCCTCTGCACTGCCGCCTTGTCACTGCTTTGCCTCTCCATGCGCAGGCTCTCATCCCATGCCATAGCCAACCCAGCACCATCTCACAGACTTGGACCAGGCCCTCATCTCTTCTTGTATCTACAAAGCTCTGTACTGCTGCTCCTGTTCCCCCAGAGCCATGGTGTCCATGGACATTCCAGTTTGCTCCATTACATGAGTGCACATGGGGAGGCGAGAGCAGGAAGGAAGAGGTGTTTTCCCGTCAAGAGCAAAGTCCCTTCTGTGCAGCCTGGCAGCGCTCAGGTCCTGGAGCACATCTGCTTTGCACGGAGATCTGGCTGTGCAAGGTGCTAAAATTGAAGCAGTAGGTCGCAGACCCAGGGCCCTCTGGCTTTCCTGACATGGGTAAATTGCTTTTCGTTTTACATTTCAGATATAACCCTGTTAAAAAAAATTAACACAGGAGGGCCTCTTGGTGCCTAAAGGGGGAGTTGTTACAGTAATGCGAGCCCAGAGACAGTTGTCCAGAGCTGCCTGCTCCTCAGCGTGGATTCCATTTCAGCAGCAGAGGTGGAGGCCATTGGCAGTGCTGCCCACTGCAGGCGGTTTCAGCCAGATCCAGAGCTGTTCTGTGCACACTGTTGGTTCATAAGCACTGACATTAGCAGGCGTGCCATGTAGCAGCATTTGTGTAATGTGGATCAGTACTTGTTAGGTGCAGAGGGCCCACCTCCACCACAGCTGTTCCTCCCAGAAGAGCCCTGGGGGCACTCGGCCGCCTGGTTGGTGTTTCAGAGCCTTCCTCCGCCCTCACTGCCCTCTCAGGAGCTGAAGTCCCCAAAATGCCCCTCCCAGCCTTAATCACACAGTTCACCTGTTAGCGGTGTCTGAATCATAACAGAACTGCTGCTCAAGAACCAAGAGCTCCCACACGGTGGCCGCTTGAGGAGGACTGCCTTCAGAAGAGCTCCTCGCTCCTGCCCTGCAGCAGTGCCTCCTCCACCTCCTGAGCTCACCTGAGCTGCCAGCATACCCACAGGAGCAGGCCGTTCTTTTCCACGTCTTCAGAGAAAGGAGGAGGAGGCAGAAGGGCCGATGGGCAGTGGCTGTGTTAGTGGAGAGCACTGGACCCTTACATCACTGAGGTGGGCCGCTCTCCTCCGATCGGCCCTCAGTGCTCCATGAGCAGTGCCTGAGCTTCTGATTTAAAGTTGTGGCGATGAAGACAAGGCTGAAGGATGGCACAGGAGAGCTTCCAGCGCCGGTGCTTTGAATGGAGGAGAAATTTCCCAATCTCTTTGCCTTGTTAACTTGAACAGGTCATCCAGATCCCTCGTGTTCATCATCCAAGAGGATAATTACTGCTGTTTATAATGAGCCAGGATGGAGGGGAAGTAGCTGGAGCTTCACTTCTTCAAGTTGGTAGTGCAGCTGGAAGGTGCTGAGCTCGCAGTCCTGCCCTCAGCCCCAGCAGCTCCAAGAGCAGCACTGAAGCCTGGGCCCAGCGGCCCTGTGAGCACTCCTGCAGTTGGACCTCATTGGTACAGAGCCTCACCCAAGAAGAAACCATTCCTTTTCAAGAAGGCATATTTCTGAAGATGTGCTTTTATCTGTGCAAAGGCTCCTTGGCAAGCAAGAGCACAGCACAGTGAAGCAGAGGCTGAAGAGCTGAGTGAAGTCTCTGCTCGCAGAGGTGACAACTGCTCCAGTAACCTGGGCCTGTTCACTTCAGCAGGGTTCTGCTGCCACACACCACTGTTTGCCTGTTCCATAGGGATGGCGGAGGGAAGAATTCAGCCTGTCAAAGGCTGTCAGATGTTTCTGATGCAAAATAATGGGAGGTGCACATCAGGAGGTATTCCTGCCCCTCTGGTAGCTCAGATCTGTTCTCTGCTCTTGGAGCAGCGTGGGAGAGGGCGTGGAAGGAACTGCTCTGTCTGGCCTCATGACCTTTCTGTTACAGGTTTTGCTTTTGTTATGGTTGTATGTTTCATTGTAG
Seq C2 exon
GCCCCTTCTCCTGTGAACCCCAATGCCCTGGACCGCACTGCTGCTTGGCTTTTGAATATGAACATGCAATTTTTAGAAGATGAAAGCATTGACCCAGATTCCAAGCACAGGGATAAGCTCAGGAATAAGGACGAGCTCAGCCAAGCAGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001419:ENSGALT00000002162:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.956 A=NA C2=0.882
Domain overlap (PFAM):
C1:
PF120043=DUF3498=FE(57.3=100)
A:
NA
C2:
PF120043=DUF3498=FE(9.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]