RnoINT0044831 @ rn6
Intron Retention
Gene
ENSRNOG00000055226 | Dab2ip
Description
DAB2 interacting protein [Source:RGD Symbol;Acc:621686]
Coordinates
chr3:15049272-15050963:+
Coord C1 exon
chr3:15049272-15050160
Coord A exon
chr3:15050161-15050810
Coord C2 exon
chr3:15050811-15050963
Length
650 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGC
5' ss Score
7.16
3' ss Seq
ACAGCTATGTTTCATCGTAGGGC
3' ss Score
6.52
Exon sequences
Seq C1 exon
TCTGATAGATTTCACCCGGTTACCGTCTCCAACCCCCGAAAACAAGGACTTGTTTTTTGTCACAAGGTCCTCCGGGGTCCAGCCTTCACCTGCCCGCAGCTCAAGCTACTCAGAAGCCAACGAGCCTGACCTGCAGATGGCCAACGGCAGCAAGAGCCTGTCCATGGTGGACCTCCAGGACGCCCGCACACTGGATGGGGAGGCAGGTTCCCCAGTGGGCCCCGAAGCCCTCCCTGCTGACGGGCAGGTACCTGCAACTCAGCTGGTGGCTGGGTGGCCAGCCCGGGCAGCCCCAGTGAGCCTGGCAGGATTGGCCACAGTGCGGCGGGCAGTGCCAACACCAACCACACCAGGCACCTCCGAGGGTGCACCAGGCCGGCCTCAGTTGTTGGCCCCTCTCTCCTTCCAGAATCCCGTGTACCAGATGGCTGCTGGCCTGCCACTGTCACCCCGTGGCCTTGGTGACTCAGGCTCTGAGGGCCACAGCTCCCTGAGCTCTCACAGCAATAGTGAAGAGCTGGCAGCCGCTGCCAAACTAGGAAGTTTTAGCACTGCTGCTGAGGAGCTGGCACGGCGGCCTGGTGAGCTGGCACGGAGGCAGATGTCACTGACTGAGAAGGGTGGTCAGCCAACAGTGCCGAGGCAAAATAGTGCAGGTCCCCAGCGGAGGATTGACCAGCCTCCACCGCCGCCACCGCCACCACCTCCTGCCCCCCGGGGCAGGACACCTCCTACCATGCTGAGCACCCTACAATACCCACGACCCTCAAGTGGAACCCTGGCATCAGCATCACCTGACTGGGCTGGCCCTGGCACCCGGCTGCGGCAACAGTCCTCCTCTTCCAAGGGAGACAGCCCAGAGCTGAAGCCCCGCGCCTTGCATAAGCAG
Seq A exon
GTCAGCATCGTGGGTGGGGCTCGTGTCAGTCAAGAGTCACAGTCTATCATGCTCTTCCTTGGTCATTTCACCTCACTTGCACCCAGCTGTCATCCCATGCTGAATGGGGCTATCTCCCGCCCCATCCACAGGCCCACCATAGAACTCCTTTTTCTGGATTTGGGACCTCCAAGGCCTTAAGCATAGGCAGGCTCCTTTACCAGTTCCCTATGGAGAGGCCGGGCAGGAAACAAGGACTGTTTCTACATCTCTAGTCTGTGCCTAGTAAAGTTCCTCCCAAATCCTGAGGCTACCTGTTGTGCTCTGGCCTCGCTTCCTAAAGCACTCACATAAGCTGAGCCTACTCCTGACATAGCTACCAGGAGGGTAACCTATCCCTGCCACCCAAGGGCTTCAGCATGACAGGCTGATGGGCAGCAGGTTGGCCACCTCTTAGCCAGGCTGCCCAGCACCCGAGGGAACAGATTGCAGTGCTCTGAGCCCACCTGGGCTCTCACCTGGCTCTGCCTGCTATCTAGAAAGCTGATATCCTTGAGTAGGCACTCAGGCAGCAGAGGTCCTCTCCCTTCCCACCTATGGCTCCCTAGTGGCCATCCCTGCCTTACCATCTCTGCCTCTTCACAGCCCCTCACAGCTATGTTTCATCGTAG
Seq C2 exon
GGCCCTTCGCCCGTCAGTCCCAATGCCCTGGACCGCACGGCCGCTTGGCTCTTGACCATGAACGCGCAGTTGTTAGAAGACGAGGGTCTGGGCCCAGATCCCCCCCACAGGGATAGGCTAAGGAGTAAGGAGGAGCTCAGCCAAGCAGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000055226:ENSRNOT00000080760:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.916 A=NA C2=0.941
Domain overlap (PFAM):
C1:
PF120043=DUF3498=FE(57.6=100)
A:
NA
C2:
PF120043=DUF3498=FE(10.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGACTGAGAAGGGTGGTCA
R:
TAACAACTGCGCGTTCATGGT
Band lengths:
358-1008
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]