MmuINT0046466 @ mm10
Intron Retention
Gene
ENSMUSG00000026883 | Dab2ip
Description
disabled 2 interacting protein [Source:MGI Symbol;Acc:MGI:1916851]
Coordinates
chr2:35719853-35721413:+
Coord C1 exon
chr2:35719853-35720741
Coord A exon
chr2:35720742-35721260
Coord C2 exon
chr2:35721261-35721413
Length
519 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGC
5' ss Score
7.16
3' ss Seq
ACAGCTGTGTTTCATCGTAGGGC
3' ss Score
7.9
Exon sequences
Seq C1 exon
TCTGATAGATTTCACCCGGTTACCGTCTCCAACCCCCGAAAACAAGGACTTGTTTTTTGTCACAAGGTCCTCCGGGGTCCAGCCTTCACCTGCCCGCAGCTCAAGCTACTCAGAAGCCAATGAACCTGACCTGCAGATGGCCAATGGCAGCAAGAGCCTGTCCATGGTGGACCTCCAGGACGCCCGCACGCTGGATGGGGAGGCAGGTTCCCCAGTGGGCCCAGACGCCCTACCTGCTGACGGGCAGGTGCCTGCGACTCAGCTGCTGGCTGGGTGGCCAGCCAGGGCAGCCCCAGTGAGCCTGGCAGGATTGGCCACAGTGCGGCGGGCAGTGCCAACACCAACCACACCAGGCACCTCCGAGGGTGCACCAGGACGGCCCCAGTTGTTGGCCCCACTTTCCTTCCAGAATCCTGTGTACCAGATGGCGGCCGGCCTGCCACTGTCACCCCGTGGCCTTGGTGACTCAGGCTCTGAAGGCCACAGCTCCCTGAGCTCTCACAGCAACAGTGAAGAGCTGGCAGCCGCTGCCAAACTAGGAAGTTTCAGCACTGCTGCAGAGGAGCTGGCAAGGCGGCCTGGAGAACTGGCACGGAGGCAGATGTCACTGACTGAGAAGGGTGGGCAGCCCACAGTGCCGAGGCAAAATAGTGCCGGTCCCCAGCGGAGGATTGACCAGCCGCCACCGCCACCACCACCACCGCCTCCTGCTCCCCGGGGCAGGACACCTCCTACCCTGCTGAGCACCCTACAGTACCCACGACCCTCAAGTGGAACCCTGGCATCAGCATCCCCCGACTGGGCTGGCCCTGGCACCCGGCTGCGGCAACAGTCCTCCTCCTCCAAGGGAGACAGCCCAGAGCTGAAGCCCCGAGCCATGCACAAGCAG
Seq A exon
GTCAGCACCATGGGCGGGGCTCTCGTTAGATTCACAGTCTGTCATGCTCTGCCTCGGTCATTTCACCTCACTTGCACCCAGCTGTCATCCCATGCTGAATGGGGCTACGTCCCGCCCCATCCACTGGCCCACCATATGAACTCCTTTTTCTGGATTCGGGACCTCTAAGGCCTCAAGCAAAGCCAGGCTCCTTTACCAGTTCCCCAGGGATAGGCCAGGAAGGCAACAAGGGCTGTTTCTTTTCATCTCTAGTGTGGCCTAGTGAAGTTCCCAAACCCCGAGGCCACCTGTCCTGCTCTGGCCTCACTCCTGAAGCACTCACATAGGCTGAACCTGCTCCTGACATAGCTACCACCTGGGCTTTCATTTGGCTCTGGCTGCTGTCTAGAAGGCTCATGTCCTTGAGTAGGCACTCTGGCAGCAGAGGTCCTTCCCTTCCCACCTGTGGCTCCCTAGTGGCCATCCCTGCCTTACCATCTCTGCCTCTTCACAGCCCCTCACAGCTGTGTTTCATCGTAG
Seq C2 exon
GGCCCTTCACCCGTCAGTCCCAATGCCCTGGACCGCACGGCCGCTTGGCTCTTGACCATGAACGCGCAGTTGTTAGAAGACGAGGGTCTGGGCCCAGATCCCCCCCACAGGGATAGGCTAAGGAGTAAGGAGGAACTCAGCCAAGCAGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026883:ENSMUST00000112983:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.914 A=NA C2=0.941
Domain overlap (PFAM):
C1:
PF120043=DUF3498=FE(85.5=100),PF120043=DUF3498=PU(2.4=1.0)
A:
NA
C2:
PF120043=DUF3498=FE(10.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACTGACTGAGAAGGGTGGG
R:
TTCATGGTCAAGAGCCAAGCG
Band lengths:
347-866
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types