MmuINT0046466 @ mm9
Intron Retention
Gene
ENSMUSG00000026883 | Dab2ip
Description
disabled homolog 2 (Drosophila) interacting protein [Source:MGI Symbol;Acc:MGI:1916851]
Coordinates
chr2:35575373-35576933:+
Coord C1 exon
chr2:35575373-35576261
Coord A exon
chr2:35576262-35576780
Coord C2 exon
chr2:35576781-35576933
Length
519 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGC
5' ss Score
7.16
3' ss Seq
ACAGCTGTGTTTCATCGTAGGGC
3' ss Score
7.9
Exon sequences
Seq C1 exon
TCTGATAGATTTCACCCGGTTACCGTCTCCAACCCCCGAAAACAAGGACTTGTTTTTTGTCACAAGGTCCTCCGGGGTCCAGCCTTCACCTGCCCGCAGCTCAAGCTACTCAGAAGCCAATGAACCTGACCTGCAGATGGCCAATGGCAGCAAGAGCCTGTCCATGGTGGACCTCCAGGACGCCCGCACGCTGGATGGGGAGGCAGGTTCCCCAGTGGGCCCAGACGCCCTACCTGCTGACGGGCAGGTGCCTGCGACTCAGCTGCTGGCTGGGTGGCCAGCCAGGGCAGCCCCAGTGAGCCTGGCAGGATTGGCCACAGTGCGGCGGGCAGTGCCAACACCAACCACACCAGGCACCTCCGAGGGTGCACCAGGACGGCCCCAGTTGTTGGCCCCACTTTCCTTCCAGAATCCTGTGTACCAGATGGCGGCCGGCCTGCCACTGTCACCCCGTGGCCTTGGTGACTCAGGCTCTGAAGGCCACAGCTCCCTGAGCTCTCACAGCAACAGTGAAGAGCTGGCAGCCGCTGCCAAACTAGGAAGTTTCAGCACTGCTGCAGAGGAGCTGGCAAGGCGGCCTGGAGAACTGGCACGGAGGCAGATGTCACTGACTGAGAAGGGTGGGCAGCCCACAGTGCCGAGGCAAAATAGTGCCGGTCCCCAGCGGAGGATTGACCAGCCGCCACCGCCACCACCACCACCGCCTCCTGCTCCCCGGGGCAGGACACCTCCTACCCTGCTGAGCACCCTACAGTACCCACGACCCTCAAGTGGAACCCTGGCATCAGCATCCCCCGACTGGGCTGGCCCTGGCACCCGGCTGCGGCAACAGTCCTCCTCCTCCAAGGGAGACAGCCCAGAGCTGAAGCCCCGAGCCATGCACAAGCAG
Seq A exon
GTCAGCACCATGGGCGGGGCTCTCGTTAGATTCACAGTCTGTCATGCTCTGCCTCGGTCATTTCACCTCACTTGCACCCAGCTGTCATCCCATGCTGAATGGGGCTACGTCCCGCCCCATCCACTGGCCCACCATATGAACTCCTTTTTCTGGATTCGGGACCTCTAAGGCCTCAAGCAAAGCCAGGCTCCTTTACCAGTTCCCCAGGGATAGGCCAGGAAGGCAACAAGGGCTGTTTCTTTTCATCTCTAGTGTGGCCTAGTGAAGTTCCCAAACCCCGAGGCCACCTGTCCTGCTCTGGCCTCACTCCTGAAGCACTCACATAGGCTGAACCTGCTCCTGACATAGCTACCACCTGGGCTTTCATTTGGCTCTGGCTGCTGTCTAGAAGGCTCATGTCCTTGAGTAGGCACTCTGGCAGCAGAGGTCCTTCCCTTCCCACCTGTGGCTCCCTAGTGGCCATCCCTGCCTTACCATCTCTGCCTCTTCACAGCCCCTCACAGCTGTGTTTCATCGTAG
Seq C2 exon
GGCCCTTCACCCGTCAGTCCCAATGCCCTGGACCGCACGGCCGCTTGGCTCTTGACCATGAACGCGCAGTTGTTAGAAGACGAGGGTCTGGGCCCAGATCCCCCCCACAGGGATAGGCTAAGGAGTAAGGAGGAACTCAGCCAAGCAGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026883-Dab2ip:NM_001114125:12
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.914 A=NA C2=0.941
Domain overlap (PFAM):
C1:
PF120043=DUF3498=FE(85.5=100),PF120043=DUF3498=PU(2.4=1.0)
A:
NA
C2:
PF120043=DUF3498=FE(9.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACTGACTGAGAAGGGTGGG
R:
TTCATGGTCAAGAGCCAAGCG
Band lengths:
347-866
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: