HsaINT0044758 @ hg19
Intron Retention
Gene
ENSG00000136848 | DAB2IP
Description
DAB2 interacting protein [Source:HGNC Symbol;Acc:17294]
Coordinates
chr9:124534886-124536691:+
Coord C1 exon
chr9:124534886-124535774
Coord A exon
chr9:124535775-124536538
Coord C2 exon
chr9:124536539-124536691
Length
764 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
3' ss Seq
ACAGCTGTGTTTCATTGTAGGGC
3' ss Score
8.85
Exon sequences
Seq C1 exon
TCTGATAGATTTCACCCGGTTACCGTCTCCAACCCCCGAAAACAAGGACTTGTTTTTTGTCACAAGGTCCTCCGGGGTCCAGCCCTCACCTGCCCGCAGCTCGAGTTACTCGGAAGCCAACGAGCCTGATCTTCAGATGGCCAACGGTGGCAAGAGCCTCTCCATGGTGGACCTCCAGGACGCCCGCACGCTGGATGGGGAGGCAGGCTCCCCGGCGGGCCCCGACGTCCTCCCCACAGATGGGCAGGCCGCTGCAGCTCAGCTGGTGGCCGGGTGGCCGGCCCGGGCAACCCCAGTGAACCTGGCAGGGCTGGCCACGGTGCGGCGGGCAGGCCAGACACCAACCACACCAGGCACCTCCGAGGGCGCGCCAGGCCGGCCCCAGCTGTTGGCACCGCTCTCCTTCCAGAACCCTGTGTACCAGATGGCGGCTGGCCTGCCGCTGTCACCCCGTGGCCTTGGCGACTCAGGCTCTGAGGGCCACAGCTCCCTGAGCTCACACAGCAACAGCGAGGAGTTGGCGGCTGCTGCCAAGCTGGGAAGTTTCAGCACTGCCGCGGAGGAGCTGGCTCGGCGGCCCGGTGAGCTGGCACGGCGACAGATGTCACTGACTGAAAAAGGCGGGCAGCCCACGGTGCCACGGCAGAACAGTGCTGGCCCCCAGAGGAGGATCGACCAGCCTCCGCCCCCACCCCCGCCGCCACCTCCTGCCCCCCGCGGCCGGACGCCCCCCAACCTGCTGAGCACCCTGCAGTACCCAAGACCCTCAAGCGGAACCCTGGCGTCGGCCTCACCTGATTGGGTGGGCCCCAGTACCCGCCTGAGGCAGCAGTCCTCTTCCTCCAAGGGGGACAGCCCAGAACTGAAGCCACGGGCAGTGCACAAGCAG
Seq A exon
GTCAGTGCTGCTAGTCAGAGGGCAGGGCTGGGCACTTGGGCCCAGCTGGGGCTGTCATACCCCATACCATGCTCCTCCTCTCGGTCATTTCACCTCCACCCTCACCCAGCTGCCATCCCATCCCACCAGCCTGCCACATGCGCCACCACCCCCTCCCCCTGGCTTCTTCCTGAATCCTGTGAACCAGGGACACTGTAGCCTTGGGGAACTCCAGGCTCCTCTGTCAGTGCCCCTAGGGGCAGGCTGGGGTCAGAGAGAAAGAGGAGGAGAGTGCATTCATCTTCGGTTCCAAGCCTGTCGAAGCGCCTACCCAGCTCTGCCCCCACACGCCCCTCCCAAAATGTTTTCACAGGCTGGACAGGCCTTCAGGCACAACCACCTGGAGCATGGATGACCCTGTCACCCAAAGGCTGCAGGCAGTGTCTGGAGTGGAGGTGCCTTGGGCTGACAGCCCAGCCTGGCCCTGTCCCCCACTCAGTGCAGCCTGCCCCGGTGCCCCCAGTGGCAGGGTCACTCACTGTCCTCTTGGCAGCAGAGTGTGGTGCTCAGGAGGCCACCTGGCACCTGTCAGCTCTGCCTTTGGCTGCCGTCTGAGAGACAGTTCCCGGGTGGGGACTGCCTCGGTAGGCGCTCAGTCAGCTGGAGGTCCCCTCTTCCCACCGTGTCCCAGAGTTGCTTGTCCTTGTGGCTCACCTGGGCCACTCCCGCCCCTCCTGCTTGCCCTCCACCTCCCTGCAGCCCCTCACAGCTGTGTTTCATTGTAG
Seq C2 exon
GGCCCTTCACCTGTGAGCCCCAATGCCCTGGACCGCACAGCCGCTTGGCTCTTGACCATGAACGCGCAGTTGTTAGAAGACGAGGGCCTGGGCCCAGACCCCCCCCACAGGGATAGGCTAAGGAGTAAGGACGAGCTCAGCCAAGCAGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136848-DAB2IP:NM_032552:12
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.919 A=NA C2=0.941
Domain overlap (PFAM):
C1:
PF120043=DUF3498=FE(57.6=100)
A:
NA
C2:
PF120043=DUF3498=FE(9.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCGACAGATGTCACTGACTG
R:
TTCATGGTCAAGAGCCAAGCG
Band lengths:
358-1122
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)