BtaINT0046513 @ bosTau6
Intron Retention
Gene
ENSBTAG00000008232 | DAB2IP
Description
Bos taurus DAB2 interacting protein (DAB2IP), mRNA. [Source:RefSeq mRNA;Acc:NM_001144082]
Coordinates
chr11:92654264-92655975:+
Coord C1 exon
chr11:92654264-92655167
Coord A exon
chr11:92655168-92655822
Coord C2 exon
chr11:92655823-92655975
Length
655 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
3' ss Seq
ACAGCTGTGTTTCATCGCAGGGC
3' ss Score
8.17
Exon sequences
Seq C1 exon
TCTGATAGATTTCACCCGGTTACCGTCTCCAACCCCCGAAAACAAGGACTTGTTTTTTGTCACAAGGTCCTCCGGGGTCCAGCCCTCACCTGCCCGCAGCTCGAGTTACTCGGAAGCCAACGAGCCCGACCTTCAGATGGCCAACGGCGGCAAGAGTCTGTCCATGGTGGACCTCCAAGACGCCCGCGTGCTGGATGGGGAGGCGGGCTCCCCAGCAGGCCCCGACGCCCTCACCGCCGATGGCCAAGCGCCTGCCACTCAGCTGGTGGCCGGGTGGCCGGCCCGGGCGGCCCCCGTGAGCCTGGCGGGGCTGGCCACAGTGCGGCGGGCAGGCCAGACGCCCACCACGCCGGGCACGTCGGAGGGCGCGCCAGGCCGGCCCCAGCTCCTGGCACCGCTGTCCTTCCAGAATCCCGTGTACCAGATGGCGGCTGGCCTGCCGCTGTCTCCCCGCGGCCTCGGCGACTCGGGCTCTGAGGGCCACAGCTCCCTGAGCTCCCACAGCAACAGTGAAGAGCTGGCAGCTGCCACCAAGCTGGGCAGCTTCAGCAGCAGCACTGCCGCCGCCGCCCCCGAAGACCTGGGCCGGCGCCCTGGGGAGCTGGCACGGCGGCAGGTGTCGCTGACCGAGAAGGGTGGGCAGCCTACAGTGCCACGGCAGAACAGCGCCGGCCCCCAGCGGAGGATCGACCAGCCGCCGCCGCCACCCCCGCCGCCGCCCCCTGCGCCCCGCGGCCGGACGCCACCCACCCTGCTGAGCACCCTGCAGTACCCACGGCCGTCGAGCGGGACGCTGGCCTCAGCCTCGCCCGACTGGGCTGGGCCCGGAGCCCGGCTGCGGCAACAGTCCTCATCCTCCAAGGGCGACAGCCCCGAGCTGAAGCCTCGCGCCGTGCACAAGCAG
Seq A exon
GTCAGTGCTGCTGGGCAGAGAGCAGGCCATCACCCCGCCGCCCCAGGGTGGGGGCGGGCTGACCCCCCATGTCGTGCTGCTCCTCCCGGCCACGTCATCTCCACCCCCACCCAGCTGCCATCCCATGCTGAATGCCACACTCGGCCCCCCTCCCACCAGCTACTTGCTGTGACACCCCCACAGTGGCCCCTGCCTAAATCCTGTGAACCAGCTTCACTGTGGCTTGGGGTCCCTCTGCCAGTTTCCCCAGAGACAGCTGGAGTCAGGGAGAAAGAGGGAGGGATCTGTCTGCCCATCTCCAGTTCCAAAGCCTGTTAAAGCCCAACCCAGGGTAGGAGTCCACCTGGCCCCTGGTCCCCCTCCTGCTCTGAGCTGGTCTTCAGGGCTCTGCGCAGAGTTATGGGTTCTTTGGGTTAGACACCGACCTGCCAGCCCAAGCCCACTGGCTCTCCCCCAGGTGGCAGAAAAGCCATGTTCAGCTAGGCTCCCCTCCGCCCCCAGCTCATGACAGCCTCAGGCTGCGTCAGGAGGCGGAACTCCCCGGGGCCGGGGGTTGCATCAGAGATGCCCATCCATCCCTGTGCCGCACCCGGGACCACCCCCTCCCCACCCCTGCCCTCCCGCCCCAGTCCCTCACAGCTGTGTTTCATCGCAG
Seq C2 exon
GGCCCTTCACCCGTGAGCCCCAATGCCCTGGACCGCACGGCTGCCTGGCTCTTGACCATGAATGCGCAGTTGTTAGAAGACGAGGGCCTGGGCCCAGACCCCCCGCACAGGGATAGGCTAAGGAGTAAGGAGGAACTCAGCCAAGCGGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008232:ENSBTAT00000032823:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.914 A=NA C2=0.941
Domain overlap (PFAM):
C1:
PF120043=DUF3498=FE(58.0=100)
A:
NA
C2:
PF120043=DUF3498=FE(9.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGCTGACCGAGAAGGGTG
R:
ACAACTGCGCATTCATGGTCA
Band lengths:
358-1013
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development