GgaALTA0000696-1/2 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000001574 | MLLT6
Description
myeloid/lymphoid or mixed-lineage leukemia; translocated to, 6 [Source:HGNC Symbol;Acc:HGNC:7138]
Coordinates
chr27:3977979-3979095:+
Coord C1 exon
chr27:3977979-3978072
Coord A exon
NA
Coord C2 exon
chr27:3978991-3979095
Length
0 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
3' ss Seq
TTCCCCGCTGACCCCAGAAGACC
3' ss Score
-1.82
Exon sequences
Seq C1 exon
TGCCCAGATGGCCGGCCTCCTGTGTGAGGAGGAAGTCCTGGAAGTTGACAATGTCAAGTATTGCGGCTACTGCAAGTACCACTTCAATAAGATG
Seq A exon
NA
Seq C2 exon
ACCTCACGGCACTCTGCAGGCAGCTCCTTCATTGCTGGGAGGAGGAGTCGCTCCACGTCCCCCACCCAGGAGAAGCACGTGTCCCACCACGACAGGCCAAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001574-8-11,8-10-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.907
Domain overlap (PFAM):
C1:
PF137711=zf-HC5HC2H=PD(35.4=87.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCAAGTATTGCGGCTACTGC
R:
GACTCCTCCTCCCAGCAATGA
Band lengths:
92-95
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]