GgaINT0143414 @ galGal4
Intron Retention
Gene
ENSGALG00000001574 | MLLT6
Description
myeloid/lymphoid or mixed-lineage leukemia; translocated to, 6 [Source:HGNC Symbol;Acc:HGNC:7138]
Coordinates
chr27:3977979-3979095:+
Coord C1 exon
chr27:3977979-3978072
Coord A exon
chr27:3978073-3978987
Coord C2 exon
chr27:3978988-3979095
Length
915 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
3' ss Seq
CCCTTCCCCGCTGACCCCAGAAG
3' ss Score
6.62
Exon sequences
Seq C1 exon
TGCCCAGATGGCCGGCCTCCTGTGTGAGGAGGAAGTCCTGGAAGTTGACAATGTCAAGTATTGCGGCTACTGCAAGTACCACTTCAATAAGATG
Seq A exon
GTGAGTTTCCTCCTCCCTCCAATGGGGATTTTATGTCATACGTAAGGCATCACCTTCGTCCTGCATTTGGCTTCCCTGATCCCACGTGTGTGGTGGAAAAAGCAGTCCCAAGGTGTCAAAGGGCTGTTTTCTCTTAGGAGGAGAGTGCCGAAGTGCTGCACTCGGTGCAAGGGATGGGAGGAGATGGGAGAGGAGGGCAGGGAGTTGGTATTGCACCCTGGGCAGGAGGTGTGATACGACAGCCTGAGCTTCTGCCGTAGGACAGGGAGAATCCAGAAGAGATGTGGAGTCATTTGCGGATGGTTTGAGGGGTATGGGAGGCAAAGGATTTCCCCTATTAATTACAGGAGTGAGAGGCATCGTTAGCAGACACCTGCACTCCCCCTCCAGCAAAAAGGAAACCTGACCTCTCCATTCATGGTGTGTCTCAGTGGCTCTTTGTTGCCTGCTTTGCCCACTTCCCTCCCTTCTTATCAGTGCTGTCACACACTGACTGATGCCTCGAGGACCCCTCCCCTGCCCTGCAGGTACCCTCAGTATACGATGTGAGCGCAGCTGGGATGAACAGCAGCATCCCTGCTGGCACCCAGAGCCTGGGCAGCCTTCCCCACAGCCCCACATGAGACCAAGGGCTGCCTGCTGTGCCTCAGGAGGATCCATTTGCCCAAGCAGCACTGCTGCTTCCATGTCTGTTGGTCTGCAGAACGGTGGTTTCCACGTTAGGAGCAGGGATGGATATCTGATGCAGGTAGAACTCAGCCCCCTCACGTTGCGAACCATTCACTTAACTGCAGCGTTGCTCACCGTGTCGATGAAAGCCGGGCTCTATAAAACTGTTCCCTCTCTCTCTCTCTCTCTCTCTGTTCCTGACCCCCACCCCTGCCCTCCGTGACGCCCCTTCCCCGCTGACCCCAG
Seq C2 exon
AAGACCTCACGGCACTCTGCAGGCAGCTCCTTCATTGCTGGGAGGAGGAGTCGCTCCACGTCCCCCACCCAGGAGAAGCACGTGTCCCACCACGACAGGCCAAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001574:ENSGALT00000002392:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.907
Domain overlap (PFAM):
C1:
PF137711=zf-HC5HC2H=PD(35.4=87.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGATGGCCGGCCTCCTG
R:
CTTCTTTGGCCTGTCGTGGTG
Band lengths:
198-1113
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]