GgaINT0143414 @ galGal3
Intron Retention
Description
NA
Coordinates
chr27:3885713-3886830:+
Coord C1 exon
chr27:3885713-3885806
Coord A exon
chr27:3885807-3886722
Coord C2 exon
chr27:3886723-3886830
Length
916 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
3' ss Seq
CCCTTCCCCGCTGACCCCAGAAG
3' ss Score
6.62
Exon sequences
Seq C1 exon
TGCCCAGATGGCCGGCCTCCTGTGTGAGGAGGAAGTCCTGGAAGTTGACAATGTCAAGTATTGCGGCTACTGCAAGTACCACTTCAATAAGATG
Seq A exon
GTGAGTTTCCTCCTCCCTCCAATGGGGATTTTATATCATACGTAAGGCATCACCTTCGTCCTGCATTTGGCTTCCCTGATCCCACGTGTGTGGTGGAAAAAGCAGTCCCAAGGTGTCAAAGGGCTGTTTTCTCTTAGGAGGAGAGCTGCCGAAGTGCTGCACTCGGTGCAAGGGATGGGAGGAGATGGGAGAGGAGGGCAGGGAGTTGGTATTGCACCCTGGGCAGGAGGTGTGATACAACAGCCTGAGCTTCTGCCCTAGGACAGGGAGAATCCAGAAGAGATGTGGAGTCATTTGCGGATGGTTTGAGGGGTATGGGAGGCAAAGGATTTCCCCTATTAATTACAGGAGTGAGAGGCATCGTTAGCAGAAACCTGCACTCCCCCTCCAGCAAAAAGGAAACCTGACCTCTCCATTCATGGTGTGTCTCAGTGGCTCTTTGTTGCCTGCTTTGCCCACTTCCCTCCCTTCTTATCAGTGCTGTCACACACTGACTGATGCCTCGAGGACCCCTCCCCTGCCCTGCAGGTACCCTCAGTATACGATGTGAGCGCAGCTGGGATGAACAGCAGCATCCCTGCTGGCACCCAGAGCCTGGGCAGCCTTCCCCACAGCCCCACATGAGACCAAAGGCTGCCTGCTGTGCCTCAGGAGGATCCATTTGCCCAAGCAGCACTGCTGCTTCCATGTCTGTTGGTCTGCAGAACGGTGGTTTCCACGTTAGGAGCAGGGATGGATATCTGATGCAGGTAGAACTCAGCCCCCTCACGTTGCGAACCATTCACTTAACTGCAGCGTTGCTCACCGTGTCGATGAAAGCCGGGCTCTATAAAACTGTTCCCTCTCTCTCTCTCTCTCTCTCTGTTCCTGACCCCCACTCCTGCCCTCCGTGACGCCCCTTCCCCGCTGACCCCAG
Seq C2 exon
AAGACCTCACGGCACTCTGCAGGCAGCTCCTTCATTGCTGGGAGGAGGAGTCGCTCCACGTCCCCCACCCAGGAGAAGCACGTGTCCCACCACGACAGGCCAAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001574:ENSGALT00000002392:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.861
Domain overlap (PFAM):
C1:
PF138321=zf-HC5HC2H_2=PD(22.9=84.4),PF045929=SelP_N=FE(26.3=100)
A:
NA
C2:
PF045929=SelP_N=FE(29.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGATGGCCGGCCTCCTG
R:
CTTCTTTGGCCTGTCGTGGTG
Band lengths:
198-1114
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]