MmuINT0099403 @ mm10
Intron Retention
Gene
ENSMUSG00000038437 | Mllt6
Description
myeloid/lymphoid or mixed-lineage leukemia; translocated to, 6 [Source:MGI Symbol;Acc:MGI:1935145]
Coordinates
chr11:97667075-97669636:+
Coord C1 exon
chr11:97667075-97667168
Coord A exon
chr11:97667169-97669423
Coord C2 exon
chr11:97669424-97669636
Length
2255 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
3' ss Seq
CTCTCAATCTCTTCCCCCAGAAG
3' ss Score
9.88
Exon sequences
Seq C1 exon
TGCCCAGATGGCTGGCCTGCTGTGTGAGGAAGAAGTCCTGGAGGTGGACAACGTCAAGTACTGCGGCTACTGCAAATACCACTTCAGCAAGATG
Seq A exon
GTGAGTCCCGCCTGCCGGTAGAGGGGTGGGGGCTTGGGCCTTGCCTGTGCCTGGGGCTGGGAGAGCTTAGAAAGATCCCATCCCTCAGTCCCTGCCTTCCAGGAACTCTGTCTGTGACAGGAAATGAGTTGCAGCCTGAGGGGTGCAGCAAATTAGAACTAGACCAAGCAGTCCAGGCTAGAAGATAGCCCTCCCCATGTCTGTCAATCTAGGAATCTGTAAGCAATGGCGTTCTAGAAGAGTAAGCAGGTAACAGCACTGGGACAGCTTCTCCTCCTCCTCTTCCTCTTCCTCTTCCTCCTCCTCCTCCTCTTCCTCCTCTTCCTCTTCCTTCTCTTCTTCCTCTTCCTCCTCCTCCTTTTTTTTGTGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAGCTCACTCTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCGTGTGCCACCACTGCCCAGCTCCTGGGACAGTTTCTTTTCTTTTTTTTTCTTTTTCTGTCTTTCTTTTTAAAGATTTATTGATTGATTGATTTTTATGTATATGAGTACACTATGGCTGTCTTCAGACACACCAGAAGAGGGCATCAGATCCCATTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGAATTGAACTCAGGACCTTCGGAAGAGCAGTCAGTGCTCTTAACCACTGAGCCATCTCTCCAGCCCCCTGGGACAGTTTCTTTTTGCCACATTGATGACTTGTGTGGTTCTCCCTCAGCCCCAAGTATGCTGCATGTGCCCCATTTCACAGATAGGTAAATTAAGGTTCCCCGAGGTTAGATAGCTTGTTTTATAGTTGGTGAGTGGGATTTGGGGCAAACAGTTTGATCAGAAAGCCCCTCAGGAAGGTGGAAAGGAGCCTCCGTTGGTGGCAGCAGGGGAGGCTGTTGAGGACCAGGTGTGGAATGAGTTCCAGACGGGGGTGAGAGCTTCATTCAGTCCAAGGGTCTCATGGCTGAGCAGACTTGGAGATTCCTCATAATGTGATGATCTACAGAGGCAGGGTGCAGGCAGGACTCTGTGCCCCAGGCCACAGCTTGGAGAGCGCCTAAGCCATAGAGTAACAAGATCAGATTTGTGTTACAGGCAGATTACCCTGGCAAGCAACCATGGAGCTGGGGAGAGAGACAGCTGGGAGGATGGGGGCGGGTGACAGGCTGATGCTGGAGTCACCATAGGTGGACCTGGCTGAGCAGCGTGAGAGTGGCCAGAGGTGGCAAGGTGAATTTGAGCTAAGATTCAGGCTGTAGCGATCACGGGGTAGGGAGAGGCGCACTCCGGAGCATCTTGGTTTGTTCCTGTTGCCTGCTGCAATGATAATAGTTCCTTTCCCACAGTGACCTGGGTTGCTCACACATTACCTGGTTGTCAAGCTTTAGAGTCTTGGAGCAGCTTAGGACTAGGGCAGTTGTCCAGTTGCACTTGCAGGTGACACCAAATGGAGATGTCAGATTGGGTGGGAGTCCCCAGGCAAGTGGCAAGGGCAGATGGTGGGTGCAGGCAGAGGCTGTCTCTGTGGGTGTCCAGATGTGAAAGAGACATGGAAGAGAAGGTGTAGAATTTGATGAGGTAGGAGTGGAGCCTGAGGAGGCCTGAAGTTAATCACAGGCTGTGGCAATTGGAGGAGGTTGGTGACCTTAGGGCGCAGCTGTGAGCCTGGGATGAGAGCAGTTCCAGGGACGCAGTGTAGTTTAGGTTGGTGTTCATTGCCAGCAGCCCCCAGTCCAGGGCAGCAGGGCTTCTGCTATACAGCTGCACAGAGGAAAATGAGGGAGGAGGATGGAATGGGGCTCCTGGGGAGCAGGGGCTCCCTGTGTGTCCTTCCCAGACCCTGCTTCTCAGGGAAGGAGATGGAAATGGGCTGTGGTCCAGTCTGCTAGGGGAGCTCTGTGGGGGTGGAGCAGAAGGAGAAGCCCAGGTCCTGCCCCATCCCCAGCCCCACTGCACCTTGTTGGGGGCTGCGGCTGGTCCATGCCTCTTCTGAGCCTCTGTGGCTGCATCCGTGCTGCGTTGGTTAAGATAGCTGGGAAGCTTTAGGATAGCTAGGCTGAGCGGAGTGTCATGGCAGACACAGGGGACCTGCAGCAGCACAGGAGTTGCTTCTAGGATCCTGCGACCTTCAGGAACCCTCCCTAGGCTCCTGAAAGAACGGGTTGGCAATTCCTCTCAATCTCTTCCCCCAG
Seq C2 exon
AAGACATCCCGGCACTCCAGCGGGGGAGGAGGAGGAGCAGGAGGAGGCAGCAGCGGCGGGGGAGGAGGTGGCAGCAGTAGTGCCAGCGGTGGTGGAGGTGGCACCGGGGGAGGCAGCGGCAACAGCTTCCTTAGCGGCAGGAGAAGCCGGTCAGCCTCGCCATCCACCCAGCCGGAGAAGCACCCTACCCACCATGAGAAGGGCCAGAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038437:ENSMUST00000044730:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.958
Domain overlap (PFAM):
C1:
PF138321=zf-HC5HC2H_2=PD(22.9=84.4)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types