RnoINT0092957 @ rn6
Intron Retention
Gene
ENSRNOG00000053285 | Mllt6
Description
MLLT6, PHD finger containing [Source:RGD Symbol;Acc:1306689]
Coordinates
chr10:85610236-85612322:+
Coord C1 exon
chr10:85610236-85610329
Coord A exon
chr10:85610330-85612115
Coord C2 exon
chr10:85612116-85612322
Length
1786 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
3' ss Seq
CTCTCCGTCTCTTCCCCCAGAAG
3' ss Score
11.57
Exon sequences
Seq C1 exon
TGCCCAGATGGCAGGCCTGCTGTGTGAGGAGGAAGTGCTGGAGGTGGACAACGTCAAGTACTGCGGCTACTGCAAATACCACTTCAGCAAGATG
Seq A exon
GTGAGTCCCGCCTGCCAGTGGGGCATGTGGGCTCTGGGTCTTACCTGTGCCTGCTTGCTGCTGGGAGAGGTGGAAAGACCATCCCTCAGTCCCCACCATCCGGGAGCTCTTTCTGTGACAGGGAATGAGCTGCAGCCTGCGGGGTGCAGCAGATTAGAACTGAACCAAGCAATCCAGGCTACGAGATTACTCCCCTCCCACCCACCCCACCCACCCGCTATGTCTGTCAGTCTAGGTATCTTTAAGCTTCAGAGAGCAAGAAAGACAAGACAAGCAAGGTAGTAGCTCTTACTGGGACAGTTTCGTCGCCACATTCATGACTTGTGTGGTTCTCCCTCAGTCGCAAGCATGCTGCGTGGGTCCCATTTCACAGATAGGTAAATTAAGGTTCTCCAAGGTTAGACAGCTTGTTTCATAACAGGCTGAGTAGGATTCAGGGCAAACAGTTTGATCAGAAAGCCCTTCAGGAAGGTGAAAAGGCACCTGTGTTGGTGGCAGCAAGGGAGGCTGCTTGGGACCAGGCATGGAATGAGTTTGAGGTGGGGGATGGGAGCTTCATTCAGTCCAAGGGTCTCATGGCTGAGCAGACTCGGAGATTCCTGGTACTGGGCTGATCTGCAGAGGCGGGGTGCAGGCAGGACCTCTGTACTCGGGGCCACAGCTTGGAGAGCTCCTAAGCCCGAGTAACATGATCAGATTTGTGTTAGAGGCAGATTACCCTGGCAAGCAACCATGGAGCTGGGTCGAGAGACAGCTGTGAGGATGGGGGTGGGTGACAGAGGGACAAGCTGATGATGGAGTCACTGTAGGTGGACCTGGCTGAGGGGTGTGAGAGGTCAAAGAGGTGGAAGGTGAATGGAGCTAGGGTCCAGGCTGTACTTGTCACGGGGTAGGGAGAGGTAGACCCCAGAGCGTCTTGGTTTGTGCTTGTTGCCCTGATGTAATGGCGTAGTCCCCTTTTCACAGTGTCCTGGCTTGCTCATAAATTACCTGGTTGCCAAGCCTCGTAGTGACTTAGGACAGTTGTTCCCTTTGCACTTGCAGGTGGCACCAAGTGGAGACAGTCAGATGGGTGGGAGTCCCCAGGCAGGCGGATGGAGGGTGCCGGGTGAGGCTGTCTCTATGGCTGTCCAGATGTGAGAGAGACCAGGGAGAGAAGATCTAGAGCTTGATAAGGTCGGAGCAGAGCCCTGAGGAGGCCCGAGGTTAATCCTAGGCTTTGGCAGTTGGGAGGTAGTCGGTGACCTTAGGGGGCAGCTGTGATCCTGAGATGAGAGCGAATTGTCCCAGGAGTTCAGTTTAATGCTCATTGCCAGCAGCCCCCAGTCCAGGGCGGCAGGTCTTTGGCTGCGCTGCCACTGTACTAAGGAAAGCAGGGGTGAGGGAGGAAGATGGGATGGTGAGAGAGAATGGTGTTTGTGGGGAGCAGGGCCTCCCCGCGTGTCCTTCACAGACCCTATTTCTAAGGGAAGGAGGTTGGAATGAAGTGGGCTGTAGTCTAGCCCACTAGGAAAGCACTGTGGAGGTCCAGCTCCACCCCCAACCCCACTGCACTGCGTTGGGGCTGAGGTTGGCCCGTGCCTCTTCTGAGCCTCCGTGGTTGAGTCTGCATTAGTTAAGACAACTGGGGCAGCTCTAGGACATCTAGGCTGAGCAGAGCAATCATGGTAGACACGCGTGACCTGCAACATCAGGGGAGCTGCTTCTAGGACCCTGCGACCTTCAGGAGCCCTCCCTAAGCTCCTGAAAGACAGGATTGGCAACTCCTCTCCGTCTCTTCCCCCAG
Seq C2 exon
AAGACATCCCGGCACTCCAGCGGGGGAGGAGGGGGAGCAGGAGGAGGCGGCAGCGGAGGCAGCGGCAGCGGCACCAGCGGTGGTGGAGGTGGCACAGGGGGAGGCGGCAGCAGCAATAGCTTCCTTAGCGGCAGGAGAAGCCGGTCAGCCTCACCGTCCACCCAGCAAGAGAAGCACCCTACCCACCATGAGAAGGGCCAGAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000053285:ENSRNOT00000092122:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.957
Domain overlap (PFAM):
C1:
PF137711=zf-HC5HC2H=PD(35.4=87.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGCCTGCTGTGTGAGGAG
R:
TCTTCTGGCCCTTCTCATGGT
Band lengths:
287-2073
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]