GgaALTA0001138-1/3 @ galGal3
Alternative 3'ss
Gene
ENSGALG00000002453 | ABCA7
Description
NA
Coordinates
chr28:2378273-2378748:-
Coord C1 exon
chr28:2378642-2378748
Coord A exon
NA
Coord C2 exon
chr28:2378273-2378414
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGA
5' ss Score
6.71
3' ss Seq
CACCATGTCCCATCCTGCAGCGT
3' ss Score
8.45
Exon sequences
Seq C1 exon
TGCTTCGGGCTGCTGGGGGTGAACGGTGCAGGGAAGACATCCACCTTCAAGATGCTGACGGGGGACACCGAAGTGACGCTGGGGGAGGCCTGGCTGAAGGGACACAG
Seq A exon
NA
Seq C2 exon
CGTGCTCACCGACCTGCAGGCTGTCCATCAGAACATGGGGTACTGCCCGCAGTTTGATGCCATCACGGAGCTGCTGACGGGAAGGGAGCATCTGCAGTTCTACAGCCGTCTGCGTGGGGTGCCGGAGGAGGAGACCCCCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002453-32-33,32-32,32-31-1/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=FE(24.1=100)
A:
NA
C2:
PF0000522=ABC_tran=FE(32.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACGGTGCAGGGAAGACATC
R:
CCCATGTTCTGATGGACAGCC
Band lengths:
126-152
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]